Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c13
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11251-1|CAA72121.1| 1148|Homo sapiens SRrp129 protein.                29   9.8  
BC033589-1|AAH33589.1|  897|Homo sapiens Unknown (protein for IM...    29   9.8  
AF030234-1|AAC39565.1| 1148|Homo sapiens splicing factor Sip1 pr...    29   9.8  

>Y11251-1|CAA72121.1| 1148|Homo sapiens SRrp129 protein.
          Length = 1148

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7   LNERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRHRLVQDQRIQIRLS-VHCPN 177
           L + NEN+  HC+ N + +  L   K    S+P++ P+  + + ++ + R S  H P+
Sbjct: 426 LKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483


>BC033589-1|AAH33589.1|  897|Homo sapiens Unknown (protein for
           IMAGE:4536747) protein.
          Length = 897

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7   LNERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRHRLVQDQRIQIRLS-VHCPN 177
           L + NEN+  HC+ N + +  L   K    S+P++ P+  + + ++ + R S  H P+
Sbjct: 638 LKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 695


>AF030234-1|AAC39565.1| 1148|Homo sapiens splicing factor Sip1
           protein.
          Length = 1148

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 7   LNERNENARFHCAINRVFAVGLQRPKPRPKSRPADLPRHRLVQDQRIQIRLS-VHCPN 177
           L + NEN+  HC+ N + +  L   K    S+P++ P+  + + ++ + R S  H P+
Sbjct: 426 LKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPS 483


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,035,683
Number of Sequences: 237096
Number of extensions: 1499867
Number of successful extensions: 6968
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6968
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)