Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16c10
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 31 0.86
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 30 2.0
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725... 30 2.0
12_01_0065 - 558521-558675,558765-558835,558914-558998,559366-55... 29 2.6
07_03_1228 - 25009736-25010965 29 2.6
08_02_0729 + 20466352-20466506,20468137-20468395,20469368-204695... 29 4.6
01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713 29 4.6
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 28 6.0
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 28 8.0
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 31.1 bits (67), Expect = 0.86
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 21 RDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDK 146
++ED E+ EE++E I++ D+ N DE E S D+
Sbjct: 532 KEEDQLSGDEDDTEELDEDQDISDNDSEENDDELELDSDMDE 573
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -1
Query: 666 SPLETSSISHL*YHLCS*ILLSILKPNLR*WLGISLLGTLWFRLESHKRSKCS 508
SPL +S +S+ YHLC I L+ R G + L +ESH CS
Sbjct: 398 SPLASSELSNSSYHLCKVIQSVALELPFRTSDGAAKSTNLDLNMESHMEEVCS 450
>02_05_1253 +
35270040-35270044,35270213-35270297,35270809-35272590,
35272710-35273237
Length = 799
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 495 VSNVLSTYFFYEIPVETTMFLEAIFPAITGGWVLVYLGVFSYISDIT 635
VS++L ++ IP+E F+ + + WVLV G F + +T
Sbjct: 96 VSDLLIAAAYFSIPLEILYFVAGLRHLLPFRWVLVQFGAFIVLCGLT 142
>12_01_0065 -
558521-558675,558765-558835,558914-558998,559366-559484,
559570-559718,560116-560157,560413-560484,560788-560897,
561446-561535,561633-561747
Length = 335
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 12 KLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENR 131
+LS DED+ +SEN E++ P EK+ V + + + R
Sbjct: 296 ELSEDEDDDSNSENPFSELDGSDPEYEKEEVEEERDEDGR 335
>07_03_1228 - 25009736-25010965
Length = 409
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +3
Query: 27 EDNKMSSENTKEEINEQVPINEKDNVNNKDEFENR----SFFDKLCEIKSNITV 176
E+ + E +EE E+ I E +N ++E E+ SFF K+ I N+ V
Sbjct: 353 EEEEDDEEEDEEEEEEEEDIEEDENEEEEEEVEDTMPVVSFFAKMSGIMMNVVV 406
>08_02_0729 +
20466352-20466506,20468137-20468395,20469368-20469502,
20470755-20470879,20471027-20471082,20471137-20471180,
20471214-20471309
Length = 289
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 486 MVCVSNVLSTYFFYEIPVETTMFLEAIFPAITGGWVLVYLGVFSYISDITDEKS 647
M+ L+ +FF+ P+ ++ EA + G ++V + +FSY+S T+ S
Sbjct: 235 MLLAGRSLNGFFFFPFPI-IILYGEAFCDSYLDGIIVVSIIIFSYLSFKTEAMS 287
>01_06_0680 + 31132683-31133499,31133597-31134717,31134811-31135713
Length = 946
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 18 SRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRS 134
S D+D+ + E+ EEI E+ E++ DE EN S
Sbjct: 340 SSDDDDDVEVEDVDEEIGEENAEEEEEGEEGADEEENDS 378
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 28.3 bits (60), Expect = 6.0
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Frame = +3
Query: 84 INEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIFAGLIIPSTLARL-AIQNLNLDKACR 260
IN+KD +N + + +N F +LC+ K + P A L+ + L + N+D AC
Sbjct: 553 INKKDQINIETKIKNIRFIGELCKFK----IAP--AALVFSCLKSCLDDFSHHNIDVACN 606
Query: 261 VKSQFGDVVCDALIERKGNYTTQEAEIQQIISHIESWRTI 380
+ C + R T + A + +I+ +++ + +
Sbjct: 607 LLE-----TCGRFLYRSPETTIRMANMLEILMRLKNVKNL 641
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +3
Query: 12 KLSRDEDNKMSSENTK---EEINEQVPINEKDNVNNKDEFENRSFFDKLCEIK 161
K +E+ K+ E K E++ E+ NE++N N KD+ EN + +K+ K
Sbjct: 253 KEDENEEEKLEEEEKKDKEEKLEEKEKENEEENGNEKDK-ENDNEIEKVKNTK 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,108
Number of Sequences: 37544
Number of extensions: 376343
Number of successful extensions: 1008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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