Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16c08
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 98 5e-21
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 60 1e-09
06_01_0671 - 4899611-4899829,4900870-4901448 57 9e-09
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 52 5e-07
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 48 4e-06
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 31 0.54
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 30 1.2
06_03_0251 + 18715023-18715106,18715274-18715396,18715509-187156... 30 1.6
01_06_1608 - 38612754-38616947,38617030-38617095 29 3.8
01_06_0460 + 29545030-29546377,29546463-29547085 29 3.8
12_01_0286 - 2127622-2127897,2128611-2128997,2129195-2129550,212... 28 6.6
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 28 6.6
07_01_0284 - 2082249-2082256,2082496-2083009 28 6.6
09_02_0548 - 10467342-10468810,10470309-10471632 27 8.7
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 27 8.7
06_01_0362 - 2587112-2587774 27 8.7
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 27 8.7
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +1
Query: 163 APKVQKPAPDFSATAVVNGEFNQLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAK 339
AP V APDF A AV + EF +KLSD+ GK YV+LFFYPLDFTFVCPTE+ AFSD+
Sbjct: 67 APLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYD 126
Query: 340 DFAGIDCQVIGVSTDSEFS 396
+F ++ +++GVS DS +S
Sbjct: 127 EFEKLNTEILGVSIDSVWS 145
Score = 96.3 bits (229), Expect = 2e-20
Identities = 42/73 (57%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Frame = +1
Query: 391 FSHLAWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLL-DDGFALRGLFIIDRNGTLRH 567
FSHLAW+ T RK GGLG ++ PL++D K ISK + VL+ D G ALRGLFIID+ G ++H
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 568 MSVNDLPVGRSVD 606
++N+L +GRSVD
Sbjct: 272 STINNLAIGRSVD 284
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Frame = +1
Query: 229 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 405
++++ DF G YV+LF +P DFT VC TEL A + AK+F +++G+S D SH
Sbjct: 56 KIRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRGVKLLGISCDDVQSHKD 115
Query: 406 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDD 513
WI ++ P++AD ++ K +++ D
Sbjct: 116 WIKDIEAYKPGNRVTYPIMADPSREAIKQLNMVDPD 151
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 57.2 bits (132), Expect = 9e-09
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 2/181 (1%)
Frame = +1
Query: 43 KSLLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPAPDFSATAVVNGE 222
+S + HA +++QLS + A +VA+ + S+ + K AP+F+ + +
Sbjct: 84 RSTMMHAAAWLLLQQLSPA----AARVARAAD--DDSSVQVSK-GSAAPNFTLR---DQD 133
Query: 223 FNQLKLSDFTGKYVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHL 402
+ LS F G+ VV++FYP D T C + AF D + F +VIG+S D SH
Sbjct: 134 GRAVSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVIGISGDDAASHK 193
Query: 403 AWINTPRKDGGLGKMEIPLLADYKKQISKDYDVLLDDGFALRG--LFIIDRNGTLRHMSV 576
+ +K K+ LL+D ++ K++ V D L G +++D+NG ++++
Sbjct: 194 EF---KKK----YKLPFTLLSDEGNKVRKEWGVPADLFGTLPGRQTYVLDKNGVVQYIYN 246
Query: 577 N 579
N
Sbjct: 247 N 247
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 51.6 bits (118), Expect = 5e-07
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +1
Query: 229 QLKLSDFTGK-YVVLFFYPLDFTFVCPTELIAFSDKAKDFAGIDCQVIGVSTDSEFSHLA 405
+++L DF G YV++F +P DFT VC TEL + A +F +++G S D SH
Sbjct: 21 KIRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRGVKLLGFSCDDVESHKD 80
Query: 406 WINTPRKDGGLGKMEIPLLADYKKQISKDYDVL 504
WI ++ P++AD ++ + +++
Sbjct: 81 WIKDIEAYKPGRRVGFPIVADPDREAIRQLNMI 113
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/48 (45%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Frame = +1
Query: 466 DYKKQISKDYDVLLDD-GFALRGLFIIDRNGTLRHMSVNDLPVGRSVD 606
+++K ++ V +D G ALRGLFIID+ G ++H ++N+L +GRSVD
Sbjct: 63 EFEKINTEVLGVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVD 110
Score = 34.3 bits (75), Expect = 0.076
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +1
Query: 295 FVCPTELIAFSDKAKDFAGIDCQVIGVSTDS 387
FV E+ AFSD+ ++F I+ +V+GVS DS
Sbjct: 48 FVSSAEITAFSDRYEEFEKINTEVLGVSIDS 78
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 31.5 bits (68), Expect = 0.54
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Frame = +1
Query: 208 VVNGEFNQLKLSDFTGKYVVLFFYPLDFTFVCP-TELIA-FSDKAKDFAGIDCQVIGVST 381
+++ + +++ +SD GKYV L F + V T L+A F +K K+ G +V+ VS
Sbjct: 181 LLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEKLKE-VGEKFEVVAVSL 239
Query: 382 DSE-------FSHLAWINTPRKD 429
DS+ F+ + W+ P++D
Sbjct: 240 DSDEELSNESFAGMPWLAIPQED 262
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Frame = +1
Query: 202 TAVVNGEFNQLK-------LSDFTGKYVVLFFYPLDFTFVCPTELIAFS---DKAKDFAG 351
TA + G FN L DF GK+ +L+F +CP EL + DK K+ A
Sbjct: 178 TAAIGGPFNLLNHDGKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAIDKIKEKAK 237
Query: 352 IDCQVIGVSTDSE 390
++ + ++ D E
Sbjct: 238 MEVVPVFITVDPE 250
>06_03_0251 +
18715023-18715106,18715274-18715396,18715509-18715611,
18716061-18716134,18716208-18716288,18716370-18716522,
18717435-18717506,18718313-18718396
Length = 257
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 43 KSLLTHAKMSFI--VKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQ-KPAPDFSATAVV 213
++ +TH K F+ QL +VLS K+ ++ + K KP D SA+ +
Sbjct: 128 EAAVTHCKGHFVNPTNQLCANVLSTIHKLMSEVSDGNILEDKCVKAAPKPTIDVSASRAL 187
Query: 214 NGEFNQL 234
E+NQL
Sbjct: 188 LEEYNQL 194
>01_06_1608 - 38612754-38616947,38617030-38617095
Length = 1419
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 70 SFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQK 180
SF+ +++SRS S +V R+ FST +T A + K
Sbjct: 165 SFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICK 201
>01_06_0460 + 29545030-29546377,29546463-29547085
Length = 656
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 606 VHGAAHGQIVHRHVTQGAITVD 541
+HG + G++ HRH+T I VD
Sbjct: 478 LHGVSGGKLAHRHLTSSNILVD 499
>12_01_0286 -
2127622-2127897,2128611-2128997,2129195-2129550,
2129923-2130046,2130128-2130196,2131190-2131238,
2132222-2132336,2132854-2132903,2133000-2133137,
2134182-2134228
Length = 536
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 439 GKMEIPLLADYKKQISKDYDVLLDDGFA 522
G+ ++P Y +Q ++DYDVL D A
Sbjct: 341 GEQQMPYPEQYMQQSTQDYDVLADPNIA 368
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 469 YKKQISKDYDVLLDDGFALRGLFIIDRNGTL 561
Y++++ KD+ LLDD LF+I++ G +
Sbjct: 43 YRRRVLKDFSKLLDDEIEKIVLFMIEQQGLI 73
>07_01_0284 - 2082249-2082256,2082496-2083009
Length = 173
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 31 KYNPKS-LLTHAKMSFIVKQLSRSVLSPAFKVAKRINFSTTSTTRAPKVQKPA 186
K +PK+ L H F+ +R LSP F +T AP + PA
Sbjct: 37 KMDPKTTFLAHGLADFVASAAARDALSPIFAKLAAAEPPPPPSTTAPIIAAPA 89
>09_02_0548 - 10467342-10468810,10470309-10471632
Length = 930
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 142 STTSTTRAPKVQKPAPDFSATAVVNGEFNQLKLSDFTGKYVVLFFYPLD 288
ST ++++AP +P S TA NG L D K + L LD
Sbjct: 10 STNNSSKAPATARPTTKGSTTASGNGRPPPTTLHDVPDKLLELILQNLD 58
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 427 DGGLGKMEIPLLADYKKQISKDYDVLL 507
DGG+GK + L +SK +DVLL
Sbjct: 290 DGGIGKTTLAKLVFNNSTVSKHFDVLL 316
>06_01_0362 - 2587112-2587774
Length = 220
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 160 RAPKVQKPAPDFSATAVVNGE 222
R PK PAPD +A A VN E
Sbjct: 46 RKPKADDPAPDAAAAADVNAE 66
>03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 418 PRKDGGLGKMEIPLLADYKKQ 480
PRK+G LG +E ADY KQ
Sbjct: 1215 PRKEGYLGPLEYSSYADYYKQ 1235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,460,524
Number of Sequences: 37544
Number of extensions: 304762
Number of successful extensions: 775
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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