Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c06
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    35   0.011
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    32   0.075
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        29   0.40 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.40 
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom...    28   0.92 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.2  
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    27   2.1  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    27   2.1  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.8  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   3.7  
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S...    26   3.7  
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar...    26   3.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    26   4.9  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   6.5  
SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator related|Schiz...    25   6.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   6.5  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   6.5  
SPBP8B7.08c |||leucine carboxyl methyltransferase |Schizosacchar...    25   8.6  

>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 34.7 bits (76), Expect = 0.011
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
 Frame = +3

Query: 33  NKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCE----IKSNITVEPIFAGLI 200
           NK SS  T +  N  +P    +N    + FE+R  FD++ E     + ++  + +    +
Sbjct: 319 NKSSSNGTPDRANSPIPSQLSENKLTLESFEHRKSFDQVREEAPLEEDSLEQQLLRDAFL 378

Query: 201 IPSTLARLAIQNLNLDKACRVKSQ 272
           +   L +L+I+N+  +    +KSQ
Sbjct: 379 LIRALCKLSIKNIPYEHEYDLKSQ 402


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 554 EHCGFDWNLIKEVSAQYIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQKCGY 393
           E CG ++N + E   ++ +  +  F ++ EEYA +      +PS HE+   C +
Sbjct: 70  EDCGTEYNEVVE-DDEFRSEDEDDFMDEEEEYALYEAELSSSPSIHEEVIDCNF 122


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +3

Query: 9    FKLSRDED--NKMSSENTK-EEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVE 179
            F+LS DED  +++   N K   +   +PI+E  ++ NK E   +    +LCE +  + +E
Sbjct: 4399 FELSEDEDIEDELPDYNVKITNLPAAMPIDEARDLWNKHEDSTKQLSIELCE-QLRLILE 4457

Query: 180  PIFA 191
            P  A
Sbjct: 4458 PTLA 4461


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
 Frame = +3

Query: 21  RDEDNKMSSENTKEEINEQVPI--NEKDNV------NNKDEFENRSFFDKLCEIKSNIT 173
           RD+D+  SSE++ E++ + +PI    K  V         ++FEN +  D   E +SN++
Sbjct: 45  RDDDSGGSSESSNEDMRDNIPIVSGRKKTVRLNRLQRESEQFENSALKDINVEYQSNLS 103


>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 597

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 3   VYFKLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSF 137
           V  + S DE++  + EN  E  NE++   +KD VN ++ ++N+ +
Sbjct: 72  VALESSSDEEDGNAEENLSE--NEELSGKKKDAVNEEELYDNKGW 114


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +3

Query: 12  KLSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIFA 191
           K   DED+    E+  ++     P     N NN++  ++ SF+ KL E    +++     
Sbjct: 479 KPKNDEDDSKVDESVAKD--STTPNELSKNANNENYDDDSSFYGKLAESVQEVSIADKKD 536

Query: 192 GLIIPSTLARLAIQNLNLDKACRVKSQFGDVV 287
             I+  +      ++ +L+K        GDV+
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVL 568


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 477 GEFMVCVSNVLSTYFFYEIPVETTMFLEAIFPAIT 581
           GE+  C  N +ST+    + +E TM  E   PA+T
Sbjct: 91  GEYEFCFDNHMSTFTDKIVTMEITMENELSLPALT 125


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 54  TKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEI 158
           T+ E N ++  NE+ +VN+ D    + FF KL +I
Sbjct: 60  TENEENNEIETNEEMHVNSHDYAFPQEFFLKLLDI 94


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 27  EDNKMSSENTKEEINEQVPINEKDNVNNKDEFEN 128
           +DN   S   K+   E +P +++DN+   D + +
Sbjct: 127 KDNHFFSHKQKKIQRESIPFHKRDNIETSDAYSS 160


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 303 ERKGNYTTQEAEIQQIISHIESWRTIIQTAIPT 401
           E +    T E E ++I + + SW+++I   +PT
Sbjct: 286 EYRDKVATLELENEKIQTELNSWKSLITNELPT 318


>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 389

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +3

Query: 318 YTTQEAEIQQIISHIESWR---TIIQTAIPTLLVIFMGAWSDRTGNRKICILLPIFGEFM 488
           Y TQ +  Q II  +++     TI+     T L I +  W D   N K  +++  + +  
Sbjct: 130 YNTQISAAQFIIDMVKANPNEITIVAAGPMTNLAIALSIWPDLAKNTKSLVIMGGYVDSQ 189

Query: 489 VCVSNVLSTYFFYEIPVETTMFL--EAIFPAITGGW 590
             ++ V    F  ++  +  +F+  EA   AIT  W
Sbjct: 190 --IAQVTGGDFLNDMYSDFNLFMEPEAAQTAITADW 223


>SPCC1223.02 |nmt1|thi3|no message in thiamine
           Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -1

Query: 506 YIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQKCGY 393
           Y +H       DW +  N+S    + P   E N   GY
Sbjct: 263 YFSHDISNVPRDWNKVTNYSKRLGIIPQDFEPNCTNGY 300


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 21  RDEDNKMSSENTKEEINEQVPINE--KDNVNNKDEFENRSFFDKLCEIKSNITVEPIFAG 194
           ++ED+++ SEN  +++ +Q+ + E  +  +  +  +  R F   L E   +  ++P+   
Sbjct: 422 QEEDHRLWSENVPKQVVDQIDVREWKRQEIIFEVIYTERDFVRDL-EYIRDFWIKPLSTS 480

Query: 195 LIIP 206
            +IP
Sbjct: 481 NVIP 484


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 512 AQYIAHADHKFTEDWEEYANFSVARPVAPSSHEDNQ 405
           +Q+I   D    EDW EY N + AR    SS  + Q
Sbjct: 894 SQFIQQLD--ILEDWFEYKNIAYARFDGASSEMERQ 927


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 324 TQEAEIQQIISHIESWRTIIQTAIPTLLVIF 416
           ++E E++Q+ S ++ WR  I  A+    ++F
Sbjct: 103 SEEQEVEQLCSTLDVWRRRIPHALVAKCIVF 133


>SPAC15E1.10 ||SPAP7G5.01|PI31 proteasome regulator
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 265

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 45  SENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIF 188
           +E+  E+      +NE  NV+ +  F N+  +       SNIT   IF
Sbjct: 42  TESLTEDSEFNYIVNESQNVSTRLIFWNKWIYILCANTSSNITATRIF 89


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 459 CKFFCCPSCRSKLP 418
           C+   CP CRSKLP
Sbjct: 45  CQSRACPLCRSKLP 58


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +3

Query: 15  LSRDEDNKMSSENTKEEINEQVPINEKDNVNNKDEFENRSFFDKLCEIKSNITVEPIFAG 194
           + R  + +    N KEE  E+   ++KD+  + ++ +N     K  E+ S++       G
Sbjct: 170 MKRKLETEKLEANNKEEKEEKEGKDDKDDKEDSNDTKNDKKISK-NEVDSSLIEASPLTG 228

Query: 195 LIIPSTLARLAI 230
            + P  L  +AI
Sbjct: 229 QVPPKFLDTIAI 240


>SPBP8B7.08c |||leucine carboxyl methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 310

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 404 SGYLHGSLERQDGQQKNLHTPPNLR*IYGLREQCIEHLL 520
           SGY+H    +     +N H PP +     +R   I+H+L
Sbjct: 20  SGYIHDPFIKFFSPSRNSHKPPIINRGTYVRTWSIDHIL 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,474
Number of Sequences: 5004
Number of extensions: 55448
Number of successful extensions: 205
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)