Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c06
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 250 LSKFKFCIANLAKVEGIINPAKIGS 176
           L  F +CIA L +  G+    K+GS
Sbjct: 312 LMSFGYCIATLLEFAGVHYFTKVGS 336


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 18  SRDEDNKMSSENTKEEINEQVPINEKDN 101
           +R  DNK +     +  N Q   N  DN
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNRNDN 535


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = +3

Query: 291 DALIERKGNYTTQEAEIQQIISHIESW 371
           + ++E +     ++AEIQ++ SH++ +
Sbjct: 16  EKIVELEALLCRRDAEIQELRSHLDKF 42


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 SQFSRD*LYLRLWPDWRYKI 237
           +  S D LYL +W   +Y++
Sbjct: 120 TNISEDCLYLNIWVPQKYRL 139


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 178 SQFSRD*LYLRLWPDWRYKI 237
           +  S D LYL +W   +Y++
Sbjct: 120 TNISEDCLYLNIWVPQKYRL 139


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 537 LESHKRSKCSIHCS 496
           ++S + S+CS+ CS
Sbjct: 11  VKSFRESRCSVRCS 24


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 471 IFGEFMVCVSNVLSTYFFYEIPVETTMFLEAI 566
           IFG  +  +   +STYF +  P   T+    I
Sbjct: 317 IFGHHLNRLGREISTYFTFTRPCGITLTFHEI 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,156
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)