Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c01
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    30   0.21 
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    29   0.64 
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   1.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    27   1.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.0  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    27   2.6  
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    26   4.5  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    26   4.5  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    26   4.5  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    26   4.5  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.0  

>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 493 YHHKNVNIAFMWVPSHRGITGNEKADKAAREAINSIDVTDSLLVPFTD 350
           YHHK+ N  +M+VP+H G+  N + +      +N   V   L+ PFT+
Sbjct: 372 YHHKDGNNEWMFVPTH-GVAYNYEENDPMNPILNGSVV--RLIHPFTN 416


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 538 KTNYVLYIIKELLYKYHHKNVN 473
           K   +  ++K LL++YHH+NVN
Sbjct: 221 KGRQIQSLMKSLLFEYHHENVN 242


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 463 MWVPSHRGITGNEKADKAAREAINSIDVTDSLLVPFTD 350
           +W    RG+ GNE+A     + ++ +D   + LV  TD
Sbjct: 280 LWDQEDRGMLGNEQAASMEEDEVDPLDAYMASLVGTTD 317


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -3

Query: 418 DKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGSIQDNLPV 239
           D  A E INS  +    L       L +KE ++ +W  L ++ Q +  K          V
Sbjct: 456 DSDAAELINSSKIQPCNLADHPQMTLQLKERLFLIWGNLEERIQHHISKGESPTLAAEDV 515

Query: 238 K-PWYE 224
           + PW++
Sbjct: 516 ETPWFD 521


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 71  YYFRLPKFPNSKTC 30
           Y++ LP FP SKTC
Sbjct: 123 YFYSLPNFPYSKTC 136


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 385 DVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGSIQDNLPVK--PW-YEKLK 215
           ++ DS ++P T+ F +I++  +    + +    ++KG  Y      LP K  P+ YE   
Sbjct: 134 ELADSQMLPMTESFADIEDIHHHQHEDEFSSSNKDKGFTYEKPVTELPPKRPPYHYESSS 193

Query: 214 TSESRV 197
           TS S V
Sbjct: 194 TSISFV 199


>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 274 KWYGSIQDNLPVKPWYEKLKTSESRVFITTINRLRFGHNTAPSHLARLGIVSN 116
           K++  I D  P+K    K+ + ESRV+    N    G   AP+    L ++S+
Sbjct: 217 KYFAVIPDGSPLKSAPTKISSGESRVYSKGTNYFCLGF-PAPAASPELFVLSS 268


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 330 SLIFRK*SVKGTSNESVTSILFIASRAALSAFSLPVMPLCEGTHINAIF 476
           S+  R+    GT++ S TS L  A  + +S F L V  +C  T+ +A+F
Sbjct: 81  SITHRENHSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTYKDALF 129


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +3

Query: 330 SLIFRK*SVKGTSNESVTSILFIASRAALSAFSLPVMPLCEGTHINAIF 476
           S+  R+    GT++ S TS L  A  + +S F L V  +C  T+ +A+F
Sbjct: 81  SITHRENHSSGTADNSSTSPLKKAFLSFISIFVLNVPAVCYLTYKDALF 129


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 115 SQCIHCQAEEGTIHHIIFDCQSF 47
           SQC+H QA E   H++  D + F
Sbjct: 184 SQCVHYQANERGKHYVSMDPEIF 206


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 272 LSLVFLIFLPQFPPQSVN 325
           L++  L+  PQFPPQ++N
Sbjct: 342 LAMTKLLASPQFPPQNIN 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,128
Number of Sequences: 5004
Number of extensions: 52142
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)