Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16c01
(573 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 56 3e-08
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 54 1e-07
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 40 0.002
AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p pro... 37 0.022
AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,... 37 0.022
AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,... 37 0.022
AF032921-1|AAC47810.1| 333|Drosophila melanogaster ribonuclease... 36 0.029
AY069329-1|AAL39474.1| 656|Drosophila melanogaster LD04718p pro... 29 5.9
AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA... 29 5.9
AE013599-2817|AAX52695.1| 656|Drosophila melanogaster CG15117-P... 29 5.9
AE013599-2816|AAM68434.1| 670|Drosophila melanogaster CG15117-P... 29 5.9
AE013599-2815|AAF57602.2| 656|Drosophila melanogaster CG15117-P... 29 5.9
BT012475-1|AAS93746.1| 670|Drosophila melanogaster RE15795p pro... 28 7.8
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 56.4 bits (130), Expect = 3e-08
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 1/144 (0%)
Frame = -3
Query: 472 IAFMWVPSHRGITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKK 293
I MW+P H GI GNE AD+AA+ A +S+ + + + TD ++K ++ T +E
Sbjct: 1043 IKIMWIPGHSGIKGNELADQAAKSA-SSMPLILTPNINTTDIKKHLKADLATKQKE---- 1097
Query: 292 DQENKGKWYGSIQDNLPVKPWYEKLK-TSESRVFITTINRLRFGHNTAPSHLARLGIVSN 116
N WY SI N Y K + +R+ I RLR GH T +H L S
Sbjct: 1098 HIINCSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGH-TNITHQHYLNPNSI 1156
Query: 115 SQCIHCQAEEGTIHHIIFDCQSFL 44
C CQ + +++HI C S L
Sbjct: 1157 PTCPFCQGDI-SLNHIFNSCPSLL 1179
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 54.0 bits (124), Expect = 1e-07
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 4/175 (2%)
Frame = -3
Query: 568 ESLSNISVNYKTNYVLYIIKELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAAREAINS 389
+SLS++S N+ +E+ + I +WVPSH+GI GNE ADKAA+E
Sbjct: 1026 DSLSSLSAIRNWNHNDPTTQEVRHILSSHPKKITLLWVPSHQGIHGNELADKAAQE---- 1081
Query: 388 IDVTDSLL-VPFTDYFLNIKENIYTLWREL--WKKDQENKGKWYGSIQDN-LPVKPWYEK 221
+ +T S+L PF L + +Y ++L W Y SI N + KP
Sbjct: 1082 MRLTPSILFTPFNSKDLKSRIKLYLKEKKLSEWALFMHR----YQSINPNCIMFKP---- 1133
Query: 220 LKTSESRVFITTINRLRFGHNTAPSHLARLGIVSNSQCIHCQAEEGTIHHIIFDC 56
T+ + T RLR GH T +H L + C C +E T+ HI+ C
Sbjct: 1134 -PTNVHKRECATFIRLRIGH-TQSTHQHLLMRSARPTCQLC-GDELTVDHILNAC 1185
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/108 (25%), Positives = 45/108 (41%)
Frame = -3
Query: 343 LNIKENIYTLWRELWKKDQENKGKWYGSIQDNLPVKPWYEKLKTSESRVFITTINRLRFG 164
L IKE I +W+ W++ Q +G+W + L W + E + + +
Sbjct: 843 LEIKEWIRGVWQTRWQESQ--RGRWTYKLIPQLT--EWAD----CEHKTVDYHMTQFLTD 894
Query: 163 HNTAPSHLARLGIVSNSQCIHCQAEEGTIHHIIFDCQSFLIQRLVLAS 20
H +L R V +QC++C T HI+ C F +R L +
Sbjct: 895 HGCFRGYLCRFRHVDTAQCLYCTDAVETAEHILLHCSRFAEERAQLVA 942
>AY089374-1|AAL90112.1| 333|Drosophila melanogaster AT19436p
protein.
Length = 333
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 511 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 401
KEL N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 323
>AE013599-539|AAF59170.1| 333|Drosophila melanogaster CG8729-PA,
isoform A protein.
Length = 333
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 511 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 401
KEL N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 323
>AE013599-538|AAS64899.1| 314|Drosophila melanogaster CG8729-PB,
isoform B protein.
Length = 314
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 511 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 401
KEL N+ + + +V +H+GI GNE ADK AR+
Sbjct: 268 KELDKLLQENNITVKWNYVEAHKGIEGNEMADKLARQ 304
>AF032921-1|AAC47810.1| 333|Drosophila melanogaster ribonuclease H1
protein.
Length = 333
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 511 KELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAARE 401
KEL N+ + + +V +H+GI GNE ADK AR+
Sbjct: 287 KELDKLLQDNNITVKWNYVEAHKGIEGNEMADKLARQ 323
>AY069329-1|AAL39474.1| 656|Drosophila melanogaster LD04718p
protein.
Length = 656
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = -3
Query: 439 ITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGS 260
+T N D E S+ V S D L I+ N+Y L ++ K G
Sbjct: 231 VTTNLSKDATVGEVFYSVSVNGSAANE-ADNVLQIQANLYDKDGILVANATSDQ-KLGGK 288
Query: 259 IQDNLPVKPWYEKLKTSE 206
+Q N PVKPW+ L SE
Sbjct: 289 LQVN-PVKPWWPYLMHSE 305
>AE014297-583|AAF54045.3| 1114|Drosophila melanogaster CG14608-PA
protein.
Length = 1114
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = -3
Query: 367 LVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGSIQDNLPVKPWYEKLKTSESRVFIT 188
LV F YF +E+ T+ L KKD+ K G +Q L VKP +K S++ +T
Sbjct: 559 LVSFAKYFA--QEHNETI-NSLSKKDKSEKVDKTG-VQTKLSVKPPLPTIKPSDTTALLT 614
Query: 187 T 185
T
Sbjct: 615 T 615
>AE013599-2817|AAX52695.1| 656|Drosophila melanogaster CG15117-PC,
isoform C protein.
Length = 656
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = -3
Query: 439 ITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGS 260
+T N D E S+ V S D L I+ N+Y L ++ K G
Sbjct: 231 VTTNLSKDATVGEVFYSVSVNGSAANE-ADNVLQIQANLYDKDGILVANATSDQ-KLGGK 288
Query: 259 IQDNLPVKPWYEKLKTSE 206
+Q N PVKPW+ L SE
Sbjct: 289 LQVN-PVKPWWPYLMHSE 305
>AE013599-2816|AAM68434.1| 670|Drosophila melanogaster CG15117-PB,
isoform B protein.
Length = 670
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = -3
Query: 439 ITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGS 260
+T N D E S+ V S D L I+ N+Y L ++ K G
Sbjct: 245 VTTNLSKDATVGEVFYSVSVNGSAANE-ADNVLQIQANLYDKDGILVANATSDQ-KLGGK 302
Query: 259 IQDNLPVKPWYEKLKTSE 206
+Q N PVKPW+ L SE
Sbjct: 303 LQVN-PVKPWWPYLMHSE 319
>AE013599-2815|AAF57602.2| 656|Drosophila melanogaster CG15117-PA,
isoform A protein.
Length = 656
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = -3
Query: 439 ITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGS 260
+T N D E S+ V S D L I+ N+Y L ++ K G
Sbjct: 231 VTTNLSKDATVGEVFYSVSVNGSAANE-ADNVLQIQANLYDKDGILVANATSDQ-KLGGK 288
Query: 259 IQDNLPVKPWYEKLKTSE 206
+Q N PVKPW+ L SE
Sbjct: 289 LQVN-PVKPWWPYLMHSE 305
>BT012475-1|AAS93746.1| 670|Drosophila melanogaster RE15795p
protein.
Length = 670
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/78 (32%), Positives = 33/78 (42%)
Frame = -3
Query: 439 ITGNEKADKAAREAINSIDVTDSLLVPFTDYFLNIKENIYTLWRELWKKDQENKGKWYGS 260
+T N D E S+ V S D L I+ N+Y L ++ K G
Sbjct: 245 VTTNLSKDATIGEVFYSVSVNGSAANE-ADNVLQIQANLYDKDGILVANATSDQ-KLGGK 302
Query: 259 IQDNLPVKPWYEKLKTSE 206
+Q N PVKPW+ L SE
Sbjct: 303 LQVN-PVKPWWPYLMHSE 319
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,441,536
Number of Sequences: 53049
Number of extensions: 494949
Number of successful extensions: 1085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2255362491
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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