Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16c01
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein...    32   0.25 
AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    31   0.44 
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    30   1.3  
AF039716-7|AAB96735.3|  617|Caenorhabditis elegans Sodium:neurot...    29   1.8  
Z66513-10|CAH19084.1|  488|Caenorhabditis elegans Hypothetical p...    29   2.3  
Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   4.1  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U41994-3|AAO91712.1|  251|Caenorhabditis elegans Rnase h protein
           1.0, isoform c protein.
          Length = 251

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 484 KNVNIAFMWVPSHRGITGNEKADKAARE 401
           + + + F+ V  H GI GNEKAD+ AR+
Sbjct: 215 QKLKVKFLHVRGHAGIDGNEKADELARK 242


>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 190 TTINRLRFGHNT-APSHLARLGIVSNSQCIHCQAEEGTIHHII 65
           T + RLR GH+    S++AR+   S S C  C + EG ++H++
Sbjct: 290 TELARLRCGHSRLCGSYVARIENRSISPCRKCGSVEGDVNHLL 332


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 178 RLRFGHNT-APSHLARLGIVSNSQCIHCQAEEGTIHHII 65
           RLR GH+     + ARL      +C++C  EEG + H++
Sbjct: 856 RLRCGHSLLVEKYKARLEERQIKKCLNCGDEEGDVQHLL 894


>AF039716-7|AAB96735.3|  617|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 1
           protein.
          Length = 617

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = +3

Query: 45  RKLWQSKII*WIVPSSA*QCIHWLFETMPSLARCDGAVLWPNLNLFIVVMKTRLSLVFNF 224
           R LW SKI  +IV + A       F  +P L   +G V +      +V +    ++V   
Sbjct: 21  RDLWPSKIE-FIVSAMAYLFAMTNFLNLPKLILENGGVAFAAAYAIVVGVLCMPTMVMEM 79

Query: 225 SYHGLTGRLSWILPYH-FPLF 284
           S   +TGR   +  YH FP+F
Sbjct: 80  SIGQVTGRAPVLAFYHLFPVF 100


>Z66513-10|CAH19084.1|  488|Caenorhabditis elegans Hypothetical
           protein F54D5.15b protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 283 NKGKWYGSIQDNLPVKPWY--EKLKTSESRVFITTINRLRFGHNTAPSHLARLGIVS--N 116
           +KGK   S+   +  +PWY  EK+K++ SR  I  I   R    TA +   R G  S  +
Sbjct: 194 SKGKSLDSLSMQVDYQPWYDTEKIKSAVSRESIANIATSREFFETASTRDWRSGANSRRD 253

Query: 115 SQC 107
           S C
Sbjct: 254 SMC 256


>Z66513-9|CAH19083.1|  561|Caenorhabditis elegans Hypothetical
           protein F54D5.15c protein.
          Length = 561

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 283 NKGKWYGSIQDNLPVKPWY--EKLKTSESRVFITTINRLRFGHNTAPSHLARLGIVS--N 116
           +KGK   S+   +  +PWY  EK+K++ SR  I  I   R    TA +   R G  S  +
Sbjct: 267 SKGKSLDSLSMQVDYQPWYDTEKIKSAVSRESIANIATSREFFETASTRDWRSGANSRRD 326

Query: 115 SQC 107
           S C
Sbjct: 327 SMC 329


>Z66513-8|CAA91340.2|  563|Caenorhabditis elegans Hypothetical
           protein F54D5.15a protein.
          Length = 563

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = -3

Query: 283 NKGKWYGSIQDNLPVKPWY--EKLKTSESRVFITTINRLRFGHNTAPSHLARLGIVS--N 116
           +KGK   S+   +  +PWY  EK+K++ SR  I  I   R    TA +   R G  S  +
Sbjct: 269 SKGKSLDSLSMQVDYQPWYDTEKIKSAVSRESIANIATSREFFETASTRDWRSGANSRRD 328

Query: 115 SQC 107
           S C
Sbjct: 329 SMC 331


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = -3

Query: 544 NYKTNYVLYIIKELLYKYHHKNVNIAFMWVPSHRGITGNEKADKAAREAINSIDV----- 380
           NYKT+   Y +K  +Y      +  +     +++  T  E  +K      N  D      
Sbjct: 122 NYKTHKFSYFVKSYVYLIRTLIITTSIFHFATYQDATKIEAHNKLNALKQNKTDQFLNCS 181

Query: 379 TDSLLVPFTDY 347
           +  LL+PFTDY
Sbjct: 182 SSFLLIPFTDY 192


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +2

Query: 452 RNPHKC--YIYILMMIFIQKLFYNIQDVISF-IIYRY 553
           R+PH    Y Y++  I++  LFY + D+I+   +Y Y
Sbjct: 35  RSPHSLGFYKYLMTYIYVFDLFYAVWDIITNPTVYSY 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,102,209
Number of Sequences: 27780
Number of extensions: 280138
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)