Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b24
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    29   0.60 
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    27   1.8  
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    25   5.6  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    25   7.3  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 280 HG-YNLLEFAKAEISSFLQRNNVKDLIFIPYAQNDFDG 390
           HG Y++LE + AEI   ++R   KD I +    ND +G
Sbjct: 407 HGLYSILETSGAEIVGDIKRAQEKDTIILAQPDNDQEG 444


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 432 ESPLIYNILYFSSIAIKVILSIRNEY*ILDIVPLEETGDFR 310
           E  ++Y +L  SS+   +I ++RNE  +L ++P  E  DFR
Sbjct: 143 ELEILY-LLRGSSVIAPLITALRNEDQVLVVLPYYEHTDFR 182


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 227 LPLWHLVVKHFCCH 268
           LP+W L V H  CH
Sbjct: 2   LPIWKLPVNHLLCH 15


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 210 KNILKLFHYGISSSSTFAV 266
           +N+LK+FH  + SS+T AV
Sbjct: 290 ENLLKVFHVPVESSTTNAV 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,436
Number of Sequences: 5004
Number of extensions: 43112
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)