Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b24
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    29   1.8  
01_05_0168 - 18865821-18866843                                         29   2.4  
08_02_1176 + 24931728-24931877,24933175-24933275,24934410-249347...    29   3.2  
03_02_0154 + 5967512-5967658,5968206-5968652,5968766-5968846,596...    29   3.2  
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305...    28   4.3  
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    28   5.6  
03_05_0431 + 24221881-24224586                                         27   9.9  
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43...    27   9.9  

>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +3

Query: 213 NILKLFHYGISSSSTFAVIIQLPWIQSFRICQSGNLQFPPKEQCQGFN 356
           N  KL    + S  T   +  LPW+   R C +     PP   C   N
Sbjct: 364 NAHKLLLAAVVSILTSCCVFGLPWLAPCRPCPTAGAPSPPNGTCHSLN 411


>01_05_0168 - 18865821-18866843
          Length = 340

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 163 CWVKNDIRFKCDRPCYH 113
           CW ++D  FK  RPC+H
Sbjct: 223 CWPRSDEVFKATRPCHH 239


>08_02_1176 +
           24931728-24931877,24933175-24933275,24934410-24934788,
           24935509-24936354,24936555-24936642,24936947-24937039,
           24937221-24937318,24937364-24937470,24938266-24938353,
           24938748-24939005
          Length = 735

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 328 GNWRFPLWQILKDCIHGSWMMTAKVLDDEMP 236
           GN  FPL  +LKD +HG    + KV +   P
Sbjct: 159 GNENFPLRSVLKDILHGEEKRSQKVNEIRHP 189


>03_02_0154 +
           5967512-5967658,5968206-5968652,5968766-5968846,
           5969058-5969075,5969552-5969748,5969844-5969943,
           5970676-5970861
          Length = 391

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 160 NINNQFSELLTYPLNCKKTYSNSSI 234
           NI N F ELL +P+NCK +  NS I
Sbjct: 213 NIYN-FGELLAHPINCKASKINSLI 236


>03_01_0392 +
           3051469-3051876,3052414-3052832,3053992-3054061,
           3054923-3055016,3056587-3056907,3057298-3057403,
           3058807-3058887,3059336-3059402,3059715-3060239,
           3060328-3060553,3060628-3060967,3061311-3061659,
           3061755-3062357
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 325 NWRFPLWQILKDCIHGSWMMTAKVLDD 245
           N  FPLW ILKDC +         +DD
Sbjct: 279 NILFPLWNILKDCFNCEEQAHGGCIDD 305


>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 LTAKKHTQTLPLWHLVVKHFCCH 268
           L++ K   + P W   +KH CCH
Sbjct: 171 LSSLKRIWSQPQWQACLKHLCCH 193


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 409 NVIDQWGFTVTGLHTYPKPETAISESKAIFIG 504
           +VID WG+ +T  HT     +AIS       G
Sbjct: 141 SVIDCWGYNMTATHTVTGAVSAISAGSVFNCG 172


>03_01_0050 +
           430744-431337,432131-432249,432539-433084,433177-433483,
           433605-433773,433861-433960,435805-436103,436796-436869,
           437007-437442,437622-437650
          Length = 890

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -2

Query: 249 TTRCH--NGRV*VCFFAVKRISE*FRELIVNVGLRMTFDLNVTGLVITYRYYYDKLFQF 79
           TTR +  +G V +C   V    E   E++++  +   FDL+++ +V + RY YD+  +F
Sbjct: 793 TTRINGDSGSVDLCLANVSNGVEATVEVVISELMVNGFDLSISCVVSSSRYEYDESKEF 851


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,618
Number of Sequences: 37544
Number of extensions: 238990
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)