Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b24
         (550 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-6|AAY55857.1|  119|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z93377-8|CAE17791.1|  318|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical...    27   8.9  

>U29535-6|AAY55857.1|  119|Caenorhabditis elegans Hypothetical
           protein C25H3.16 protein.
          Length = 119

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 174 LIVNVGLRMTFDLNVTGLVITYRYYYDKLFQ 82
           L + +GL M F L + G++  +R+YY +L +
Sbjct: 30  LFLFIGLTMGFILIMVGIMAAFRWYYRRLLE 60


>Z34802-1|CAA84336.1|  531|Caenorhabditis elegans Hypothetical
           protein M88.1 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 346 KDLIFIPYAQNDFDGYTTKIKNVIDQWGFTVTGLHTYPKPE 468
           K  +F+PY  N    + T++  V+   G  VT +H    P+
Sbjct: 18  KYAVFVPYMANSQVQFCTRVAEVLANGGHDVTMIHLSHLPD 58


>Z93377-8|CAE17791.1|  318|Caenorhabditis elegans Hypothetical
           protein F13A7.12 protein.
          Length = 318

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 534 LFKSKKVFSTPNKDSFRFTNSSFWLRICVQTSDCESPLIYNIL 406
           +FK+      P  + FR  ++ FW +    T+DC+    Y  L
Sbjct: 60  IFKAFYKCVRPKLEPFRGRHNDFWFKFAEVTADCDELKEYKAL 102


>AL023844-11|CAA19525.3|  489|Caenorhabditis elegans Hypothetical
           protein Y48A6B.10 protein.
          Length = 489

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 140 SNVILNPTLTISSLNYSLILLTAKKHTQTLPLW 238
           +N ++   L      Y L+LLT KK T+ L LW
Sbjct: 419 ANSVVRMALQEGVRAYFLVLLTEKKPTEILELW 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,902,422
Number of Sequences: 27780
Number of extensions: 234763
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)