Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b24
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 171  IVNVGLRMTFDLNVTGLV 118
            IVN  LR+TF  NV G V
Sbjct: 963  IVNSNLRLTFSKNVQGRV 980


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 122 RPVTFKSNVILNPTLTISSL 181
           RP TF  NV  NP  T+S L
Sbjct: 323 RPATFTCNVRGNPIKTVSWL 342


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = -2

Query: 549 LFLYNLFKSKKVFSTPNKDSFRFTNSSFWLRICVQTSDCESPLIY 415
           + LYN    +   +T  K    +T    W    +  S CE  + Y
Sbjct: 107 IVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRY 151


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 471 SFWLRICVQTSDCESPLIYNI 409
           S W+ +CV      SP  +N+
Sbjct: 326 SIWITVCVLNVHFRSPSTHNM 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,931
Number of Sequences: 438
Number of extensions: 2956
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)