Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b13
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    47   2e-07
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 46.8 bits (106), Expect = 2e-07
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 11/178 (6%)
 Frame = +2

Query: 191 VVKEIKDKGGVAV---ADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQ 361
           +V+E+K K G  V    D ++  +  K+I+    N G IDILINNA I  D +       
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVL 106

Query: 362 DWDLIQAVHLKGAFKTTHAAWETFRKQ--KYGRIVMTSSNAGLF---GNFGQANYSAAKL 526
           DW  I  ++L G         +  +K+    G IV  +  +GL     N  +  Y A+K 
Sbjct: 107 DWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKC 166

Query: 527 GLVGLANTLAIEGA--KYNIKVNTIVP-TAASRLTEDILPPEMYEAMKPELIAPVVAY 691
            L  L + L  E A  + NIKV +I P    + +T   L      A+KP+ ++  V +
Sbjct: 167 ALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLF 224


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 40 TQLIHPRRCTETK 2
          T L+HP RCT+ K
Sbjct: 13 TFLLHPSRCTQGK 25


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated
          chloride channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 40 TQLIHPRRCTETK 2
          T L+HP RCT+ K
Sbjct: 13 TFLLHPSRCTQGK 25


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 186 SAALDFPAPSLALPRSLTTT 127
           S  L  PA S +LP ++TTT
Sbjct: 91  SRPLHPPASSTSLPATITTT 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,659
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)