Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16b08
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0047 + 17557087-17558350,17558396-17558475,17559115-175591... 146 1e-35
04_03_0737 - 19152942-19154930 89 3e-18
04_03_0739 + 19180048-19182039 84 7e-17
02_03_0380 + 18335903-18337837 81 7e-16
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 36 0.019
05_05_0170 + 22913791-22914315,22914418-22914581,22914675-229153... 34 0.10
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 32 0.31
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358... 30 1.2
03_01_0119 + 935554-937161 30 1.6
06_03_1045 - 27111771-27112097,27112205-27112330,27112434-271126... 27 8.8
>01_05_0047 +
17557087-17558350,17558396-17558475,17559115-17559149,
17559545-17559551,17560405-17560719
Length = 566
Score = 146 bits (354), Expect = 1e-35
Identities = 66/164 (40%), Positives = 104/164 (63%)
Frame = +2
Query: 101 MGIDGNTILAESLKKQGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATG 280
M +DG+ + +L G ++FG+VGIPV A +AG++++ RNEQ+A YAA A G
Sbjct: 1 MKVDGSALAGRALAAAGARHMFGVVGIPVTSLASRAAAAGVRFLAFRNEQSAGYAAAAYG 60
Query: 281 YLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSS 460
+LTG PG+ L VSGPG +H + G+++A N WPL++++GSC + G FQE Q+ ++
Sbjct: 61 FLTGSPGLLLTVSGPGCVHGLAGLSHATANAWPLLMVSGSCSQPDAGRGDFQELDQIAAT 120
Query: 461 RMYCKYAARPPSPRLIPQHVEKAVRLALXGRPGVSYLDMPGTLL 592
+ + K A + + IP+ V +A+ + GRPG YLD+P +L
Sbjct: 121 KPFIKIAVKATTIADIPRLVFQALAATVSGRPGGCYLDIPSDVL 164
>04_03_0737 - 19152942-19154930
Length = 662
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Frame = +2
Query: 113 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 289
G IL E+L + GV VFG G +E A +S ++ +R+EQ +AA +
Sbjct: 91 GADILVEALGRCGVRDVFGYPGGASMEIHQALTRSPAIRNHLLRHEQGEAFAASGYARSS 150
Query: 290 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 469
G+PGVC+ SGPG + + +A+A ++ PLV I G P FQE P V+ +R
Sbjct: 151 GRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQVPRRMIGTDAFQETPIVELTRSI 210
Query: 470 CKYAARPPSPRLIPQHVEKAVRLALXGRPGVSYLDMP 580
K+ IP+ + +A LA GRPG +D+P
Sbjct: 211 TKHNYLVLDVDDIPRVINEAFFLATTGRPGPVLVDIP 247
>04_03_0739 + 19180048-19182039
Length = 663
Score = 84.2 bits (199), Expect = 7e-17
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Frame = +2
Query: 113 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 289
G I+ E+L++ GV VF G +E A +S ++ +R+EQ +AA +
Sbjct: 87 GADIVVEALERCGVRDVFEYPGGASMEIHQALTRSPVIRNHLLRHEQGEAFAASGYARSS 146
Query: 290 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 469
G+PGVC+ SGPG + + +A+A ++ PLV I G P FQE P V+ +R
Sbjct: 147 GRPGVCVATSGPGATNLVSALADAHLDSVPLVAITGQAPRRMIGTDAFQETPIVEFTRSI 206
Query: 470 CKYAARPPSPRLIPQHVEKAVRLALXGRPGVSYLDMP 580
K+ IP+ + +A LA GRPG +D+P
Sbjct: 207 TKHNYLILDVDDIPRVINEAFFLASTGRPGPVLVDIP 243
>02_03_0380 + 18335903-18337837
Length = 644
Score = 81.0 bits (191), Expect = 7e-16
Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 1/157 (0%)
Frame = +2
Query: 113 GNTILAESLKKQGVEYVFGIVGIPVIETAMAF-QSAGLKYIGMRNEQAACYAAQATGYLT 289
G IL E+L++ GV VF G +E A +S + R+EQ +AA +
Sbjct: 73 GADILVEALERCGVSDVFAYPGGASMEIHQALTRSPVITNHLFRHEQGEAFAASGYARAS 132
Query: 290 GKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMY 469
G+ GVC+ SGPG + + +A+A ++ P+V I G P FQE P V+ +R
Sbjct: 133 GRVGVCVATSGPGATNLVSALADALLDSVPMVAITGQVPRRMIGTDAFQETPIVEVTRSI 192
Query: 470 CKYAARPPSPRLIPQHVEKAVRLALXGRPGVSYLDMP 580
K+ IP+ +++A LA GRPG +D+P
Sbjct: 193 TKHNYLVLDVEDIPRVIQEAFFLASSGRPGPVLVDIP 229
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 36.3 bits (80), Expect = 0.019
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +2
Query: 125 LAESLKKQGVEYVFGIVG---IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGK 295
LA L + GV VF + G + +++ +A GL+ +G NE A YAA G
Sbjct: 20 LARRLVQVGVSDVFAVPGDFNLTLLDHLIA--EPGLRLVGCCNELNAGYAADGYARARGV 77
Query: 296 PGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 397
G C V G L + +A A P++ IAG
Sbjct: 78 -GACAVTFTVGGLSVLNAIAGAYSENLPVICIAG 110
>05_05_0170 +
22913791-22914315,22914418-22914581,22914675-22915325,
22915425-22915542,22915635-22915823,22915948-22916118
Length = 605
Score = 33.9 bits (74), Expect = 0.10
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +2
Query: 125 LAESLKKQGVEYVFGIVG---IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGK 295
LA L + G VF + G + +++ +A GLK IG NE A YAA G
Sbjct: 49 LARRLVQIGATDVFAVPGDFNLTLLDYLIA--EPGLKLIGCCNELNAGYAADGYARARG- 105
Query: 296 PGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 397
G C V G L + +A A P++ I G
Sbjct: 106 VGACAVTFTVGGLSVLNAIAGAYSENLPVICIVG 139
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 32.3 bits (70), Expect = 0.31
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Frame = +2
Query: 125 LAESLKKQGVEYVFGIVG------IPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYL 286
LA L + G VF + G + +E G++ +G NE A YAA
Sbjct: 34 LARRLAEVGARDVFTVPGDFNLTLLDELEAEAGAGHGGVRLVGCCNELNAAYAADGYARA 93
Query: 287 TGKP-GVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAG 397
G G C V G L I +A A P+V I G
Sbjct: 94 RGGGVGACAVTFTVGGLSAINAVAGAFSENLPVVCIVG 131
>02_04_0371 +
22434710-22435102,22435428-22435624,22435707-22435824,
22436458-22436574,22436702-22436803,22437431-22437487,
22437976-22438044,22438423-22438533,22438597-22438791,
22439023-22439121,22439656-22440222,22440344-22440568,
22441036-22441338,22441640-22441707,22441947-22442105,
22442230-22442475,22442549-22442680,22443243-22443351,
22444131-22444283,22444359-22444601,22444695-22444862,
22445013-22445156,22445238-22445699,22446495-22446791,
22446867-22447024,22447139-22447246,22447474-22447732
Length = 1752
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/90 (20%), Positives = 40/90 (44%)
Frame = +2
Query: 230 IGMRNEQAACYAAQATGYLTGKPGVCLVVSGPGLLHCIGGMANAQVNCWPLVVIAGSCPE 409
I +E++ + A G + KP + + SG + + + + A + PL+++ P
Sbjct: 414 ISCYDERSLGFHALGYGRGSRKPAIVITSSGTAVSNLLPSVVEASQDFVPLILLTADRPP 473
Query: 410 DHEAIGGFQEWPQVDSSRMYCKYAARPPSP 499
+ + +G Q QV+ + ++ P P
Sbjct: 474 ELQDVGANQAINQVNHFGSFVRHFFSLPPP 503
>03_01_0119 + 935554-937161
Length = 535
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 219 PADWKAIAVSMTGIPT-IPNTYSTPCFFK 136
P WKAIA + G+P + + S PCF K
Sbjct: 16 PGRWKAIAAKLEGLPACLSDLSSHPCFAK 44
>06_03_1045 -
27111771-27112097,27112205-27112330,27112434-27112673,
27113343-27113429,27113520-27113652,27113711-27113820,
27114308-27114424,27114526-27114610,27114693-27114796,
27115530-27115612,27115729-27115819
Length = 500
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 339 ASGEWPMLK*TVGHWLL*LARVLKIMKLLVASRNGL 446
A GE P+L GH + +AR+ K+ L V R G+
Sbjct: 426 AGGETPVLMSGAGHDAMAMARLTKVGMLFVRCRGGV 461
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,660,082
Number of Sequences: 37544
Number of extensions: 483354
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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