Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16b06
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 34 0.020
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 29 0.43
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.56
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 28 0.98
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 28 1.3
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 2.3
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 27 3.0
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 9.1
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 33.9 bits (74), Expect = 0.020
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 410 VSXVATALPLAAICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARV 589
VS ATA ++ P F +GRK ++ + + + TS + L+AAR
Sbjct: 126 VSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARA 185
Query: 590 IAGIASGG 613
IAGI GG
Sbjct: 186 IAGIGGGG 193
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.43
Identities = 30/122 (24%), Positives = 49/122 (40%)
Frame = +2
Query: 248 RQKNESNANKQIFTALLATIPTFTYGIQIGWLSPLGPVLKSKQSPADTPLNDDXVSXVAT 427
R+K E + NK L + F + + ++ L PV+ S+ + S + T
Sbjct: 21 RKKEELSVNKWTILPAL-WVGGFLSALDMTIVASLYPVIGSEFKLMNN------ASYIVT 73
Query: 428 ALPLAAICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVIAGIAS 607
A + P + S FGR+ V+ + + S + P L AR +AGI
Sbjct: 74 AYLITNTAFQPLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGG 133
Query: 608 GG 613
GG
Sbjct: 134 GG 135
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 29.1 bits (62), Expect = 0.56
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +2
Query: 413 SXVATALPLAAICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVI 592
S + TA LA +PF S GRK+ + +L + + N L+ R +
Sbjct: 128 SWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 593 AGIASGGCFVAVPV 634
GI GG V +
Sbjct: 188 QGIGGGGIMSLVTI 201
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 0.98
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 413 SXVATALPLAAICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVI 592
S + TA LA +PF S GRK+ + +L + + N L+ R +
Sbjct: 128 SWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAV 187
Query: 593 AGIASGG 613
GI GG
Sbjct: 188 QGIGGGG 194
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 482 RFGRKLCVIXVSLLSCVSWTIKLTSI-NTPSLIAARVIAGIASGGCFVAVP 631
RFG++ C++ +L+ ++LT+I + ++ A++ G+ G V P
Sbjct: 82 RFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMMVAKIWTGLGIGALSVIAP 132
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 48 ENLNLLNQFNHDINTHRNYDILMLIRDF*EVST*FNLYGSCXXXXXVYS 194
+ +N + +N + T + ML RDF E S F+L G VYS
Sbjct: 162 KQINRMVPYNFERTTPLIESLTMLSRDFREYSEKFDLQGDSILPEVVYS 210
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +1
Query: 517 LIVMCVLDDQADFDQHPVSDSSQGHSRYSIRRLLRC 624
+++ +L+ + FD +P D + ++RL+RC
Sbjct: 310 IVLFALLEGRLPFDSYPTLDPENVRIKRYVQRLVRC 345
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 426 QPYLSPLYVGYPSSAT 473
+PYLSPL +PSS +
Sbjct: 14 RPYLSPLQTSFPSSTS 29
>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 329 QIGWLSPLGPVLKSKQSPAD 388
++GWL P P L S Q P D
Sbjct: 470 KMGWLKPNQPYLLSIQDPVD 489
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,062
Number of Sequences: 5004
Number of extensions: 47618
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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