Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b06
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    35   0.042
AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical...    31   0.69 
U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical pr...    30   1.6  

>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 27/115 (23%), Positives = 47/115 (40%)
 Frame = +2

Query: 290 ALLATIPTFTYGIQIGWLSPLGPVLKSKQSPADTPLNDDXVSXVATALPLAAICGIPFFS 469
           A  + I  F +G     +S    +L    +P   P++      + +  P  A  G     
Sbjct: 29  AAASVIGGFLFGYDTSVVS--AAMLYMPDAPGLKPMDTVWQEVLVSISPGMAAVGSLMSG 86

Query: 470 YASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVIAGIASGGCFVAVPV 634
            +S   GR+  ++  S +  +   +   S+N   L+  RV+ GIA G   + VPV
Sbjct: 87  TSSDYIGRRKVILGASAIFTIGALVCAASVNKIMLLVGRVLLGIAIGFASMIVPV 141


>AL021497-13|CAA16411.2|  550|Caenorhabditis elegans Hypothetical
           protein Y51A2D.18 protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 446 ICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVIAGIASGGCFVA 625
           + G   F   S  FGRK+     SL   + W I + S N      +R I G  +GG    
Sbjct: 140 LTGSIVFGQISDSFGRKIGSQVASLGMLIGWLIVVQSRNLLHFTISRTIVGFFTGGSISI 199

Query: 626 VPV 634
           + V
Sbjct: 200 INV 202


>U00031-5|AAP68960.1|  534|Caenorhabditis elegans Hypothetical
           protein B0361.11 protein.
          Length = 534

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 425 TALPLAAICGIPFFSYASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVIAGIA 604
           T   + A+  +PF S  + R+GRK  ++  ++L+ ++      S N    +  R   G  
Sbjct: 151 TIFTIGAVIAVPFMSMLADRYGRKPIIVTTAILAFLANMAASFSPNFAIFLILRAFIGAC 210

Query: 605 S 607
           S
Sbjct: 211 S 211


>Z46381-4|CAA86519.2|  604|Caenorhabditis elegans Hypothetical
           protein M01F1.5 protein.
          Length = 604

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/115 (23%), Positives = 44/115 (38%)
 Frame = +2

Query: 290 ALLATIPTFTYGIQIGWLSPLGPVLKSKQSPADTPLNDDXVSXVATALPLAAICGIPFFS 469
           A  A I  F +G   G +S    +L    +    PL+      + +  P  A  G     
Sbjct: 32  AFSAVIGGFLFGYDTGIVS--AAMLYVPNASGIKPLDSVWQEIIVSITPGVAAIGSLCSG 89

Query: 470 YASXRFGRKLCVIXVSLLSCVSWTIKLTSINTPSLIAARVIAGIASGGCFVAVPV 634
             S   GRK  +I  S+   +   I   +     L+  R++ G+A G   + VP+
Sbjct: 90  PGSDFLGRKKIIIGASVTFTIGAIICAAAWTKIILLIGRILLGLAIGFASMIVPI 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,027
Number of Sequences: 27780
Number of extensions: 266400
Number of successful extensions: 678
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)