Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b04
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.76 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 219 GSCKIFTKRFGARCLLWMG 275
           GS +++TK  GA+ LL MG
Sbjct: 152 GSWEVYTKGIGAKLLLQMG 170


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 190 LGCPTANYPLEVVK 231
           L CP A YP+E +K
Sbjct: 538 LKCPVAGYPIEEIK 551


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 190 LGCPTANYPLEVVK 231
           L CP A YP+E +K
Sbjct: 538 LKCPVAGYPIEEIK 551


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 415 ALIGYLRGEKNFNCLDALIEQIRED 489
           AL  +  G+  F  +DA++ Q+RE+
Sbjct: 343 ALAKWANGQTGFPWIDAIMTQLREE 367


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 316 YLLPSHIQVLCQLEPIHNKHLAPNLLVKILQL 221
           YL   H+++    E  HNK L    + K L +
Sbjct: 785 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 816


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 316 YLLPSHIQVLCQLEPIHNKHLAPNLLVKILQL 221
           YL   H+++    E  HNK L    + K L +
Sbjct: 823 YLCAGHVRLPYTFEQFHNKELLWTSVKKALMI 854


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 134 RTDDIFLN*KNIFMRFFFLL 75
           R   +FLN  ++FMR F L+
Sbjct: 264 RKATLFLNMASVFMRIFNLI 283


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -1

Query: 145 GKKAELMTFSSIEKIFSCDSFFY 77
           GK+   ++ S + +I+  D++FY
Sbjct: 71  GKETLALSISMLARIWKPDTYFY 93


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 196 CPTANYPLEVV 228
           CP A YP+E +
Sbjct: 512 CPVAGYPIESI 522


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 396 WF*FKNCSNWVSEGR 440
           WF +   S WV +G+
Sbjct: 499 WFDYSEVSKWVQKGQ 513


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,161
Number of Sequences: 438
Number of extensions: 3609
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)