Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16b02
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 28 1.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 1.4
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 2.4
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.1
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 26 4.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 9.6
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 25 9.6
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 25 9.6
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 9.6
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp... 25 9.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.6
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -3
Query: 214 GIVIYFEERLTSNFNKNYYVHKNTSSVTFLRHG 116
GIV ++E TS+F+K++Y H ++ + +G
Sbjct: 35 GIVESYQESSTSDFDKSHYTHNSSIAAADSEYG 67
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -1
Query: 408 ERTHLRRHSVSNSLHDKMAHAHNSRASSTHSMHDSGMFFF 289
+ TH H + HD H H+S SS++S ++ F
Sbjct: 13 DSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQF 52
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 492 TLPRRHDQHPALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDKMAHAHNSRASSTHS 316
T+P + + Q RT+A LL ER LRR ++ L + +NS HS
Sbjct: 376 TIPYSVTEAANVFQNKTKRTLAVEQLLSERELLRRFTLQQRLVADLHEFYNSVKGPAHS 434
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 246 LKLDRNM*NKGY**KKKTFHYRALNAWKKRGNCAHAPSCREA 371
L ++R + NK + FH L W K N + P CR +
Sbjct: 1565 LSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCPLCRSS 1606
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = -1
Query: 468 HPALIQEHLVRTVARLPLLGERTHLRRHSVSNSLHDK 358
HP+ + H ++ +AR P + + + S+ N ++K
Sbjct: 275 HPSSLHMHRIKKIARYPYMYDDARMMEQSLLNLAYNK 311
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 387 HSVSNSLHDKMAHAHNSRASS 325
H S+S+H AH+ +SR+SS
Sbjct: 621 HLSSSSVHSSSAHSSSSRSSS 641
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 581 NRPAPTAGVSSSGSFTFLEDLTVTRACSSPLFPAG 477
+R PT+GVSS G F L V+ S+ F G
Sbjct: 46 SRKRPTSGVSSPGIFANLAAKPVSLPASTTQFTFG 80
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 140 IGHFLTSRRFLNFKLNNTS 84
I H LTS R NF LN+TS
Sbjct: 614 IKHVLTSTRTQNFVLNDTS 632
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 378 SNSLHDKMAHAHNSRASSTHSMHDS 304
SNS+H+K H S ASS+ S+ S
Sbjct: 175 SNSVHEKQNTDHASNASSSSSVVSS 199
>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -1
Query: 420 PLLGERTHLRRHSVSNSLHDKMAHAHNSRASSTHSMHDSGM 298
PL E + S SNSLHD A + SS ++ + G+
Sbjct: 288 PLSLEVANSETVSTSNSLHDPSAEPYPVNRSSLSNLRNLGL 328
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -1
Query: 456 IQEHLVRTVARLPLLGERTHLRRHSVSNSLHDKMAHA---HNSRASST 322
+ H R+ + LP+ E + S L D+ AHA H+S + ST
Sbjct: 180 VSPHAARSASSLPVPKEASETPFRDASTDLFDEHAHAAPMHSSISIST 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,168
Number of Sequences: 5004
Number of extensions: 40895
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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