Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b02
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603...    29   4.3  
03_06_0715 + 35693002-35694585                                         29   4.3  
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529...    28   7.5  
06_03_0828 + 25137782-25138312,25141349-25141588                       28   7.5  
06_03_1363 - 29576265-29577575                                         27   9.9  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           27   9.9  

>11_01_0730 -
           6037375-6037509,6037892-6038019,6038339-6038423,
           6038525-6038614,6040015-6040113,6040207-6040335,
           6041341-6041463,6041549-6041711,6042331-6042380,
           6042593-6042706,6042993-6043199,6043275-6043412,
           6044708-6044770,6044845-6044928,6045014-6045094,
           6045212-6045363,6045479-6045614,6045991-6046107
          Length = 697

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 446 CSWIRA-GCWSCRRGRVGTSTP 508
           CSW +  GCW C R R   STP
Sbjct: 624 CSWNKEEGCWVCMRIRSDKSTP 645


>03_06_0715 + 35693002-35694585
          Length = 527

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 590 PIVNRPAPTAGVSSSGSFTFLEDLTVTRACSSP 492
           P V +P P    SSSGS +F   L    AC  P
Sbjct: 492 PTVVKPPPPPSTSSSGSSSFASKLLSCFACGRP 524


>07_01_0702 +
           5288588-5288889,5289257-5289407,5289543-5289725,
           5290063-5290137,5290248-5290403,5290502-5290597,
           5290855-5290985,5291057-5291138,5291237-5291586,
           5293029-5293234,5293254-5293570
          Length = 682

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 361 VVKRI*HGMASQMRSLAEEGKAGDGADEMLLDKSRVLVVPAG 486
           V++R+   MAS MR+    G A DGA E+ +  S V  +P G
Sbjct: 64  VLRRVADAMASGMRA----GLADDGAGELKMIPSHVYSLPTG 101


>06_03_0828 + 25137782-25138312,25141349-25141588
          Length = 256

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 HGMASQMRSLAEEGKAGDGADEMLLDKSRVLVVPAGKSGDE 501
           HG+    R +   G  GDGAD +LL     +VV  G+ GD+
Sbjct: 186 HGINRCCRLVGGGGVGGDGADRLLL-----VVVGGGEEGDD 221


>06_03_1363 - 29576265-29577575
          Length = 436

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/83 (28%), Positives = 34/83 (40%)
 Frame = +1

Query: 388 ASQMRSLAEEGKAGDGADEMLLDKSRVLVVPAGKSGDEHALVTXXXXXXXXLPDDDTPAV 567
           A + R++AE  +   GA EM +   +  VV  G  G +  +V          P    PA 
Sbjct: 348 ADRWRTVAESDRL-KGAAEMTVAGGKACVVAPG--GGKVLIVDVTP------PPPPPPAA 398

Query: 568 GAGRFTIGPAPERDWEMVPPDGK 636
               +   P P R WE+  P GK
Sbjct: 399 RRESWAAPPPPPRMWEVAAPGGK 421


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 441 VRTVARLPLLGERTHLRRHSVSNSLHDKMAHAHNSR 334
           +R++ +L LL        +  SN +H+KMAHA+ ++
Sbjct: 838 LRSLKKLWLLHLHKDFNTYWESNGMHEKMAHANTAK 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,723,371
Number of Sequences: 37544
Number of extensions: 302377
Number of successful extensions: 968
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)