Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16b02
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.64 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.64 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.64 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.64 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 641 PHFPSGGTISQSRSGAGPIVNRPAPTAGVSSSGSFTFLEDLTV 513
           P +P GG+ S S S      +  +PT+    S ++T + DL V
Sbjct: 81  PSYPGGGSSSPSPSSPSSFFSSVSPTS--LGSENYTGISDLFV 121


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 602 SGAGPIVNRPAPTAGVSSSGSFTFLEDLTVTRACSS 495
           SG+     RPA  A VS S S   LEDL   ++C S
Sbjct: 464 SGSTNFNERPA-VAVVSKSSSINKLEDLRNKKSCHS 498


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 602 SGAGPIVNRPAPTAGVSSSGSFTFLEDLTVTRACSS 495
           SG+     RPA  A VS S S   LEDL   ++C S
Sbjct: 464 SGSTNFNERPA-VAVVSKSSSINKLEDLRNKKSCHS 498


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 602 SGAGPIVNRPAPTAGVSSSGSFTFLEDLTVTRACSS 495
           SG+     RPA  A VS S S   LEDL   ++C S
Sbjct: 464 SGSTNFNERPA-VAVVSKSSSINKLEDLRNKKSCHS 498


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 544 PDDDTPAVGAGRFTIGPAPERDW 612
           P   T  +G+G + IG + E DW
Sbjct: 376 PGXYTMVIGSGVYRIGSSVEFDW 398


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 519 NRHQGVLVPTLPRRHDQHPALIQEHL 442
           N+ +  L   L + H QHP +++E L
Sbjct: 364 NKLRNALQTVLAQNHPQHPDILRELL 389


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 406 LAEEGKAGDGADEMLLDKSRVLVVPAGKSGDE 501
           + +EG++ +G     L K  ++  PA + GD+
Sbjct: 663 IKQEGQSPEGGKLTRLIKRELVDAPADQEGDD 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,243
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)