Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16b01
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 38 0.008
12_02_0849 - 23640091-23640279,23640537-23640677,23640756-236422... 31 0.52
05_03_0335 - 12629472-12629930,12630009-12631481,12631578-12631628 29 2.1
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 29 2.8
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600... 29 3.7
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 28 4.9
01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605 28 4.9
05_04_0209 - 19073147-19074041,19074117-19074163,19074258-190744... 28 6.5
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 27 8.5
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 27 8.5
01_07_0101 + 41086735-41086809,41088634-41088721,41089727-410899... 27 8.5
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 348 KIKETPE--NMTTNEKPSDHSSNTGEMDLEDLIAPSTVIKTGMKPSDFENASKQTSDALS 521
KI + P+ + N + H + D +L + TG+ PSDF+N + Q S+ L
Sbjct: 260 KISQNPDVTEIDANSEDEQHQGDCNSEDKRNLKFNKETLGTGIFPSDFDNTNVQQSNDLV 319
Query: 522 NISADR 539
NI +R
Sbjct: 320 NIMLER 325
>12_02_0849 -
23640091-23640279,23640537-23640677,23640756-23642203,
23642300-23642372,23642452-23642572,23642689-23642791,
23642979-23643052,23643140-23643285,23643368-23643476,
23643580-23643704,23643989-23644342,23644440-23644503,
23644581-23645032
Length = 1132
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/81 (20%), Positives = 37/81 (45%)
Frame = +3
Query: 255 VMSLTNKRTHDEMCNEPENLALSTTDLNPAKKIKETPENMTTNEKPSDHSSNTGEMDLED 434
V +L +R D ++ L++ ++ P + +++T E + + G+ D +D
Sbjct: 413 VQNLRKQRPIDVATSQDMRFILTSANVAPWNRSSHPKKSVTNKESCKEFLEDFGDYDSDD 472
Query: 435 LIAPSTVIKTGMKPSDFENAS 497
L T +KT DF +++
Sbjct: 473 LNESFTGLKTSASHRDFRSSN 493
>05_03_0335 - 12629472-12629930,12630009-12631481,12631578-12631628
Length = 660
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +3
Query: 309 NLALSTTDLNPAKKIK-----ETPENMTTNEKPSDHSSNTGEMDLEDL 437
+LA+ST L+P KKIK P NM+T++ P+ S +D E++
Sbjct: 571 SLAMSTLALDPKKKIKFKKTQPQPTNMSTDDLPALDPSIEQALDEEEI 618
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 294 CNEPENLALSTTDLNPAKKIKETPENMTTNEKPSDHSSNTGE 419
CN PE++ + DLN + T EN ++P ++ G+
Sbjct: 625 CNNPEDMITESVDLNSVTNVDNT-ENKVEVQQPHKRTAGAGK 665
>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
21260180-21260461,21261084-21261587,21261973-21261981,
21262122-21262196,21262375-21262449,21262557-21263494,
21263577-21263607,21263694-21263979,21264691-21264905,
21265329-21265437,21265556-21265611,21265730-21265822,
21266348-21266393,21266496-21267221,21267489-21267550,
21267738-21268013,21268604-21268735,21268835-21268909
Length = 1394
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 240 DDGNSVMSLTNKRTHDEMCNE-PENLALSTTDLNPAKKIKETPENMTTNEKPSDHSSNTG 416
DD + + + DE+ E E ++ + P + IKE ENM T+ + H
Sbjct: 1139 DDETKMNAGHSAAAQDELVKEGKEKMSADHSTAPPKELIKEGEENMNTDNSAAVHVEPVA 1198
Query: 417 EMDLED 434
+ +ED
Sbjct: 1199 DEKMED 1204
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +3
Query: 387 KPSDHSSNTGEMDLEDLIAPSTVIKTGMKPSDFENASKQTSDALSNISADREVKSPSKIP 566
+ S+ + + ++ LE+ A + K F++ K ++DA + ++ K+P +P
Sbjct: 394 RQSNIAESPAQLLLEEASAKQSASKKVSSVQQFQSPPKVSTDAPNPSTSVPNQKAPEALP 453
Query: 567 QDERE 581
+DE++
Sbjct: 454 EDEKK 458
>01_07_0170 - 41670694-41671634,41672014-41672982,41673050-41673605
Length = 821
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 351 IKETPENMTTNEKPSDHSSNTGEMDLEDLIA 443
I + N+ K SDHS NTG+ + +D +A
Sbjct: 30 IGDIGSNLKKLPKQSDHSCNTGDDEFDDAVA 60
>05_04_0209 - 19073147-19074041,19074117-19074163,19074258-19074437,
19074839-19074955,19075105-19075227,19075391-19075776,
19076177-19076303,19077140-19077202,19078035-19078086,
19078189-19080023
Length = 1274
Score = 27.9 bits (59), Expect = 6.5
Identities = 29/123 (23%), Positives = 55/123 (44%)
Frame = +3
Query: 189 DKINKIPSEYLPRSXTADDGNSVMSLTNKRTHDEMCNEPENLALSTTDLNPAKKIKETPE 368
D++ ++PS L S + D S+ K DEM ++ +L++++ PA T +
Sbjct: 1140 DELLQLPSLILSSSVKSSD--SIAQFQQKADADEML---QSSSLASSE-KPA-----TFK 1188
Query: 369 NMTTNEKPSDHSSNTGEMDLEDLIAPSTVIKTGMKPSDFENASKQTSDALSNISADREVK 548
N ++ D E L PS+ + + KP+ F++ +++ S S D E+
Sbjct: 1189 NWSSASDTITQFQQRANAD-ESLPLPSSSLASSEKPATFKSTWSSAAESNSVFSGDEEID 1247
Query: 549 SPS 557
S
Sbjct: 1248 DAS 1250
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +3
Query: 357 ETPENMTTNEKPSDHSSNTGEMDL----EDLIAPSTVIKTGMKPSDF 485
ETPE ++EKP + SN + E+ I IK P+DF
Sbjct: 145 ETPEMTASSEKPEEEGSNAATEESNEAEEETIDEKPEIKIETAPADF 191
>03_06_0454 +
34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +3
Query: 393 SDHSSNTGEMDLEDLIAPSTVIKTGMKPSDFENASKQTSDALSNISADREVKSPSKIPQD 572
SD + E +L + P+ +P D + + DAL+N+ ++ E + KI +D
Sbjct: 391 SDRMQSVQEENLLSAMVPADQNDDRCRPDDTGSDQENFVDALNNMESEGEAHAEMKIKKD 450
>01_07_0101 +
41086735-41086809,41088634-41088721,41089727-41089923,
41090077-41090266,41090469-41090860,41091390-41091965
Length = 505
Score = 27.5 bits (58), Expect = 8.5
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = -1
Query: 397 SDGFSFVVIFSGVSLIFXAGFKSVVDSAKFSGSLHISSWVLLLVNDITEFPSSAVXLL 224
SD +SF V+F L G K++ D+ K G ++ +W L D +FP A +L
Sbjct: 281 SDVYSFGVVF----LELITGRKAI-DNTKPQGEQNLVAWARPLFKDRRKFPKMADPML 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,774,197
Number of Sequences: 37544
Number of extensions: 259452
Number of successful extensions: 760
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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