Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a23
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen prot...    31   0.84 
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    28   4.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 103 HPPLG-HSACAPQVKLCQCPST*NTQHEFIRENRSCIVRLC 222
           +PPL   S  AP +KL    S  N +HE IR  ++   RLC
Sbjct: 110 NPPLRKRSGSAPSIKLITLASIWNLKHEHIRALKTTWARLC 150


>AF045646-2|AAK29827.1|  371|Caenorhabditis elegans Collagen protein
           103 protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 350 PPSPAGDPSQTSGVVVGASGYGFVPPGSQG 439
           PP PAG P           GYG  PPG  G
Sbjct: 257 PPGPAGPPGPPGNNGAPGGGYGVGPPGPPG 286


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
           protein F47C12.1 protein.
          Length = 1827

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 163 T*NTQHEFIRENRSCIVRLCSAYLSP 240
           T N  ++FIR N+SC+ R CS   SP
Sbjct: 674 TGNNMNDFIRFNKSCVPRQCSHIGSP 699


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 40  PPATQHIPEWAVFQIGVSQLAHPPLGHSACAPQVKLCQCPST*NTQHEFIRENRS 204
           PP   H P +   +I  SQ  HPP  H     + +     +   TQ+ F + N S
Sbjct: 72  PPKPLHQPSYLPLEISTSQHHHPPHHHPTQFQRGQSLALSNPIPTQNAFWQHNNS 126


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 320  PRANPGPVLFPPSPAG--DPSQTS 385
            P+ NPGP   PPSP G  DP++ S
Sbjct: 936  PKPNPGPGPGPPSPNGPSDPNKPS 959


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 320 PRANPGPVLFPPSPAGDPSQTSGVVVGASGYGFVPPGSQG 439
           P   PGP   PP PAG+  Q      G +G    PPG  G
Sbjct: 240 PPGPPGPA-GPPGPAGNAGQAGYAQPGPAG----PPGDAG 274


>AF077536-4|AAK31409.1|  726|Caenorhabditis elegans Hypothetical
           protein C16A11.3 protein.
          Length = 726

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 602 IQRANKKINTNIAILV*QEIITIFVLRRTVHCYSTCREISSNYNL 468
           ++  +KKI  N+   V Q  I+   LR+TV   + C E+S N NL
Sbjct: 274 LEAMDKKIQYNVLSRVFQATIS---LRKTVQKLTKCGEMSKNGNL 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,932
Number of Sequences: 27780
Number of extensions: 317397
Number of successful extensions: 1120
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)