Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt16a19
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 185 6e-48
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 179 4e-46
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 170 2e-43
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 148 9e-37
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 140 2e-34
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 122 5e-29
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 95 1e-20
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 31 0.12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 31 0.12
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 30 0.29
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 30 0.38
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 29 0.66
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 29 0.87
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 28 1.5
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 27 2.7
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 27 3.5
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.5
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 27 3.5
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 26 6.1
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 8.1
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 25 8.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.1
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 185 bits (450), Expect = 6e-48
Identities = 85/176 (48%), Positives = 121/176 (68%), Gaps = 3/176 (1%)
Frame = +3
Query: 192 GYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYP---ERVIPDAT 362
GYVGFA+LPNQ HR+ V++GF F ++V+GESG GKSTLVN+L D+YP + + D
Sbjct: 74 GYVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDFG 133
Query: 363 EKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRD 542
TV +++S VEI E G+ L+L V+DTPG+GD IDNTDC++ ++ I+ +++++L
Sbjct: 134 VNPEPTVMINSSAVEIVENGISLQLNVIDTPGFGDFIDNTDCWQPVLTDIEGRYDQYLEL 193
Query: 543 ESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 710
E R I D R+H C +FI P GH + +++ M LH KVNI+P+IAKAD LT
Sbjct: 194 EKHNPRSTIQDPRVHACIFFIQPTGHAISAMELRVMLALHEKVNIIPIIAKADTLT 249
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 179 bits (435), Expect = 4e-46
Identities = 83/183 (45%), Positives = 125/183 (68%), Gaps = 4/183 (2%)
Frame = +3
Query: 177 NLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLY----PER 344
N E +VG A+LPNQ H+ + G FTLM+ GESGLGK+T N+LF T + PE+
Sbjct: 2 NEEETNFVGIADLPNQRHKIVSRNGVAFTLMLCGESGLGKTTFCNTLFSTTIKSHMGPEK 61
Query: 345 VIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQF 524
V EKT V+++ + E+EE+ LRLTV+DTPG+GD I+N+ C+ S++++I++Q
Sbjct: 62 VRAKHAEKT---VEIEITKAELEEKNFHLRLTVIDTPGFGDFINNSGCWESVVEFIEDQH 118
Query: 525 ERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADC 704
E ++R + +RR I+D RIH C YF+ P +G++P+D+E MK + +VN++PVIAKAD
Sbjct: 119 ESYMRQDQQPDRRKIIDMRIHACLYFLRPVRNGVRPMDLEAMKHISKRVNLIPVIAKADM 178
Query: 705 LTK 713
T+
Sbjct: 179 YTR 181
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 170 bits (413), Expect = 2e-43
Identities = 78/173 (45%), Positives = 116/173 (67%), Gaps = 1/173 (0%)
Frame = +3
Query: 195 YVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTN 374
YVGF ++ +Q++RK +++GF+F +MVVG SG GKSTL+N+LF L + D
Sbjct: 12 YVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQAPYR 71
Query: 375 QTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGL 554
QT ++ ++ + E V+L+L ++DTPGYGD I+N C+ II+YI +Q +LR E
Sbjct: 72 QTTEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWEPIIKYIRDQHSSYLRRELNS 131
Query: 555 NR-RNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 710
+R + + D R+HCC +FI P GH L+P+DI +K+L VN+VPVIAK+D LT
Sbjct: 132 HREKRLQDTRVHCCLFFIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLT 184
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 148 bits (358), Expect = 9e-37
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 1/168 (0%)
Frame = +3
Query: 210 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK-TNQTVK 386
+LP++ +K T+M+ G SG GK+T N+LF T L PE+ A E +T++
Sbjct: 15 SLPSKRENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYETAKETIAKKTLE 74
Query: 387 LDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN 566
+ + IEE G + LTV+DTPG+GD IDNT C+ ++ +Y+DEQ ER+L + R
Sbjct: 75 VKKNKAVIEEDGFHINLTVLDTPGFGDFIDNTSCWNTVAEYLDEQHERYLIHDQNSLRVP 134
Query: 567 IVDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLT 710
D R+H C YFI+P G+ PLD+ MK+L VN+VPVIAKAD T
Sbjct: 135 RKDTRVHVCLYFITPVSFGMLPLDVLAMKELSTHVNLVPVIAKADTFT 182
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 140 bits (338), Expect = 2e-34
Identities = 78/200 (39%), Positives = 113/200 (56%), Gaps = 3/200 (1%)
Frame = +3
Query: 120 EYNIKKLLKMSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKS 299
++ + +LL + + T T G + L + +KS KKG LMVVG+ GLG++
Sbjct: 8 DFGVVQLLFLHSNDTLTARTHITKGQIDI-ELTMRTTKKSSKKGIPLNLMVVGDVGLGRT 66
Query: 300 TLVNSLFLTDL--YPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAI 473
+N+L L + P + + T I E G K+ LTV+DTP +G+AI
Sbjct: 67 AFINTLCEKPLIRHNNNFDPAEASSVSPVEIVPYQTDIILEDGTKINLTVLDTPHFGEAI 126
Query: 474 DNTDCFRSIIQYIDEQFERFLRDESGLNRR-NIVDNRIHCCFYFISPFGHGLKPLDIEFM 650
DN + F I+QYI+ Q++ L +ES + R D+R+H YFISP GHGL+ LDIE M
Sbjct: 127 DNENNFDIILQYIESQYDNVLEEESRIKRNARFCDDRVHALIYFISPTGHGLRELDIELM 186
Query: 651 KQLHNKVNIVPVIAKADCLT 710
++L +VNI+P IAKAD LT
Sbjct: 187 RRLAPRVNIIPAIAKADSLT 206
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 122 bits (294), Expect = 5e-29
Identities = 63/190 (33%), Positives = 104/190 (54%), Gaps = 1/190 (0%)
Frame = +3
Query: 144 KMSNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFL 323
++ N K+ +G + +Q + + + G + L+VVGES LGK+T VNS
Sbjct: 81 EVPNSNGKSIPTFHPCNNIGINDFNHQHYSRVCRNGIDINLIVVGESSLGKTTFVNSFLQ 140
Query: 324 TDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSII 503
++ D + +T+ + + K LT+VDTPG+GD DN++C+R I
Sbjct: 141 SN--------DTNFRPKKTMDFVEHKATLSDGDQKFNLTIVDTPGFGDKSDNSNCWRPIA 192
Query: 504 QYIDEQFERFLRDESGLNRRNI-VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHNKVNIV 680
+ + + ++E ++R +D+RIH C +FI+P GH L+PL+I MK++ VNI+
Sbjct: 193 TNLLHRLNAYFQNEVKMDRETSEIDSRIHGCLFFINPNGHRLQPLEIYIMKKIDQFVNII 252
Query: 681 PVIAKADCLT 710
PVI KAD +T
Sbjct: 253 PVIGKADTMT 262
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 94.7 bits (225), Expect = 1e-20
Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Frame = +3
Query: 243 KKGFEFTLMVVGESGLGKSTLVNSLFLTD-LYPERVIPDATEKTNQTVKLDASTVEIEER 419
KKG + +MV G S +NSL L E I ++ +++ +I E
Sbjct: 14 KKGKKLRIMVAGSSYTSYQACINSLCSKQILEAETEIDPLKAHIDRILEIREFNADILED 73
Query: 420 GVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRN-IVDNRIHCCF 596
+ LTV++ G+GD IDN+ F + Y++ QF++ L +ES + R + D R+
Sbjct: 74 EFHVDLTVIEVNGFGDKIDNSASFEVVTHYLESQFDQALIEESKIKRNSKFTDTRVDALL 133
Query: 597 YFISPFGHGLKPLDIEFMKQLHNKVNIVPVIAKADCLTK 713
YFI+P GH L D+E MK+ +VN++PVI ++ T+
Sbjct: 134 YFIAPRGHCLSEFDLEAMKRFSKRVNVIPVIGNSNAFTE 172
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 443
L+VVGE+G GK+T + D Y + T+ A V EE GV+L TV
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVS-EEMGVRLGSTV 569
Query: 444 VDTPGYGDAIDNTDCFRSIIQYIDE 518
GY ++ ++I+Y+ +
Sbjct: 570 ----GYSIRFEDVTGPDTVIKYMTD 590
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 31.5 bits (68), Expect = 0.12
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 413
F L+++G+SG+GKS L+ F D Y E I + +T +L+ TV+++
Sbjct: 9 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 30.3 bits (65), Expect = 0.29
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEK--TNQTVKLDASTVEI 410
L+VVG+ G GK+ L+ +F + +PER +P E T+ T ++ +E+
Sbjct: 17 LVVVGDGGCGKTCLL-IVFSSGTFPERYVPTVFENYITDITYGPNSKVIEL 66
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +3
Query: 267 MVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 413
+++G +G GKST+V+++ + +P +++ A E + +K +T IE
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLGWPPKLLGRAKE-AREFIKYGKNTATIE 84
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +3
Query: 594 FYFISPFGHGLKPLDIEFMKQLH--NKVNIVPVIAK 695
FY IS FG+GL+ E+++ +H KVN P + K
Sbjct: 323 FYCISNFGYGLR----EYLRYIHQKQKVNAAPAVPK 354
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 28.7 bits (61), Expect = 0.87
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 522 FERFLRDESGLNRRNIVDNRIHCCFYFISPFGHGLKPLDIEFMKQL--HNKVNIVPVIAK 695
F++ L+D G R +I+DN C S F + PL + + + N VN V V+ K
Sbjct: 1188 FQKLLKDAKGQLRIHIIDNMSRICLRETSLF---ISPLMLSTLDMIIAENNVNEVSVLFK 1244
Query: 696 A 698
+
Sbjct: 1245 S 1245
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 413
L+++G+SG+GKS L+ P + + +T++LD ++++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQ 61
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 255 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 434
+F L+ +GE +GK++L+ + F+ D + D T + + + T+ +E+R V+L+
Sbjct: 11 KFKLVFLGEQSVGKTSLI-TRFMYDQF------DNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 435 LTVVDTPG 458
L DT G
Sbjct: 64 LW--DTAG 69
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 570 VDNRIHCCFYFISPFGHGLKPLDIEFMKQLHN 665
+D C F+S F H L P + KQL N
Sbjct: 562 IDALSSCMEEFVSSFSHELTPFASQLAKQLRN 593
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 210 NLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLF 320
NLP ++ SV + + +VG +G GKSTL +LF
Sbjct: 1236 NLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALF 1272
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.5
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 270 VVGESGLGKSTLVNSLFLTDLYP-ERVIPDATEKTN-QTVKLDASTVEIEERGVKLRLTV 443
+VG SG GKSTLV L T YP E + D TN T L ++++ L T+
Sbjct: 1133 IVGISGSGKSTLVELLRKT--YPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGSTI 1190
Query: 444 VDTPGYG 464
+++ YG
Sbjct: 1191 LESLLYG 1197
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 255 EFTLMVVGESGLGKSTLVNSLFLTDLYPE 341
E+ L+VVG+ G+GKS L L + E
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDE 36
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = -1
Query: 611 R*YEVETAMNAIVHNVTTV 555
R Y VE A NAIVH V++V
Sbjct: 1574 RIYGVEAARNAIVHEVSSV 1592
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 339 ERVIPDATEKTNQTVKLDAST-VEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYID 515
E ++ D + KL A + +EE V+ GY CFRSI+ + +
Sbjct: 147 ETLMTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPYIIRGYRFYTSKRKCFRSILSWHN 206
Query: 516 EQF 524
E F
Sbjct: 207 ETF 209
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 243 KKGFEFTLMVVGESGLGKSTLVN 311
KK ++++GESG+GK++++N
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMN 26
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 8.1
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +3
Query: 264 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRLTV 443
++VVGE+G GKST + FL + + A + + ++ + E+G +L V
Sbjct: 115 IVVVGETGSGKSTQIPQ-FLNECPYAQEGCVAITQPRRVAAVNLAKRVAAEQGCRLGEQV 173
Query: 444 VDTPGYGDAIDNTDCFRSIIQYIDE 518
GY D+T ++ I+Y+ +
Sbjct: 174 ----GYSIRFDDTTSKKTRIKYLTD 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,853
Number of Sequences: 5004
Number of extensions: 52339
Number of successful extensions: 273
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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