Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a12
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...   186   2e-48
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    74   2e-14
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    33   0.049
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.20 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    30   0.26 
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    28   1.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.4  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    27   1.8  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    27   3.2  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   5.6  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   7.5  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   7.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   7.5  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.5  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.9  

>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score =  186 bits (454), Expect = 2e-48
 Identities = 85/140 (60%), Positives = 113/140 (80%), Gaps = 1/140 (0%)
 Frame = +2

Query: 251 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 430
           G+R +L+GPPG+GKGTQAP +++KY + HL+TGDMLR++V+  ++LG+  KK+MD+G LV
Sbjct: 3   GMRLILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLV 62

Query: 431 SDEMVVDMI-DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 607
           SD++V  MI D+ L+ PECKNGF+LDGFPRTV QAEKL  LL + K  L+ V+E  ++D 
Sbjct: 63  SDDIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDE 122

Query: 608 LLVRRITGRLIHPPSGRXYH 667
           LLVRRITGRL+HP SGR YH
Sbjct: 123 LLVRRITGRLVHPGSGRSYH 142


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 73.7 bits (173), Expect = 2e-14
 Identities = 41/107 (38%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
 Frame = +2

Query: 266 LLGPPGSGKGTQAPRLKEKY-CVCHLSTGDMLRAEVS-SGSDLGRRLKKVMDEGKLVSDE 439
           +LG PG+GKGTQ  RL EK+    H+S GD LR E +  GS  G  +K+ + +GK+V  E
Sbjct: 7   VLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIVPME 66

Query: 440 MVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTAL 574
           + + +++  + +   K  + FL+DGFPR + Q E  +  +   K AL
Sbjct: 67  ITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFAL 113


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
 Frame = +2

Query: 233 PDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLS--TGDML----RAEVSSGSDLGR 394
           PDE P  +   ++GPPG+GK T    L  +Y    +S  TG +     +    +  +   
Sbjct: 68  PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRYSKYTISQITGPITVVAGKKRRITFLECPN 127

Query: 395 RLKKVMDEGKLVSDEMVVDMIDKN----LDQPECKNGFLLDGFPRTVPQAEKLDDLLAKR 562
            L  ++D  K+   ++V+ +ID N    ++  E  N     G PR +     L DL  K 
Sbjct: 128 DLSSMIDVAKIA--DLVLLLIDANFGFEMETMEFLNILAPHGMPRIMGVLTHL-DLFKKT 184

Query: 563 KTALDA 580
            T  +A
Sbjct: 185 STLREA 190


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 221 TKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEK 322
           T + P   P     V++GP GSGK T A  + EK
Sbjct: 4   TPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEK 37


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 302 APRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 478
           +P L      C  S  +MLR       D G   +K++ E +  S      ++D+++ QP
Sbjct: 183 SPNLLRVNAPCRKSLSEMLRELKDIEDDYGSNEEKILQEFESFSSSSSESLVDRDISQP 241


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +2

Query: 245 PLGIRAVLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEG 421
           P GI  ++ GPPG+GK   A  +  E      L  G  + ++++  S+    L+K  +E 
Sbjct: 258 PRGI--LMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESE--SNLRKAFEEA 313

Query: 422 KLVSDEMV-VDMIDKNLDQPECKNG 493
           +  S  ++ +D ID    + E  NG
Sbjct: 314 EKNSPAIIFIDEIDSIAPKREKTNG 338


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/72 (25%), Positives = 28/72 (38%)
 Frame = +2

Query: 251 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 430
           G+R    G P       AP   EK       TGD+  +E+S+ +     +   +D G + 
Sbjct: 171 GVRKSKAGAPSDPSSVHAPSSLEKPA----GTGDLPSSEISTKAPASTTVSSSVDPGTIN 226

Query: 431 SDEMVVDMIDKN 466
            D  + D    N
Sbjct: 227 EDSSMKDHTTSN 238


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 458 DKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVI-EFGIEDSLLVRRIT 628
           ++N +QP    G    GF R++PQ ++L  ++ +    L+ ++ + G  D  L + IT
Sbjct: 232 NENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAIT 289


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 27/103 (26%), Positives = 47/103 (45%)
 Frame = +2

Query: 299 QAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQP 478
           +AP+L+EKY +C + T   L   + +G    +    VMDE   + +   ++  D  L   
Sbjct: 159 KAPKLREKYDMC-IGTPMRLVQAIQTGLSFEKVEFFVMDEADRLFEPGFIEQTDHILSAC 217

Query: 479 ECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDS 607
              N      F  T+P   ++++ LAK  T     I  G++D+
Sbjct: 218 TSSN-ICKSLFSATIP--SRVEE-LAKVVTVDPIRIIVGLKDA 256


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 338 LSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV-VDMIDKNLDQPECKNGFLLDGFP 514
           L TG  ++  V   +  G    K+ +  K +  ++  +++++ N+D PE  N      F 
Sbjct: 211 LMTGKKIKGTVLIDAANGVGAAKIKELAKYIDPKLFPIEIVNDNIDNPELLNNSCGADFV 270

Query: 515 RT 520
           RT
Sbjct: 271 RT 272


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 146 KGKQSP*RKNYKVRKGQSHTYLIQNKWI 63
           K   S  ++N+++R+G++ +YL Q  W+
Sbjct: 682 KKSHSSYKENFQLRRGKTVSYLNQKLWL 709


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 335 DKHNTFLSDEEPESPYRIQEGQVARPLFLKD 243
           D H++ L+DE  ES  R+QE + +   F+ D
Sbjct: 271 DPHSSSLADEYRESNKRLQESKESCARFILD 301


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 347 QWIGDKHNTFLSDEEPESPYRIQEGQVARPLFLKD 243
           QW+G        DE+P    R+Q+   A P+FL D
Sbjct: 63  QWLGWCGQEIPEDEKPMIIQRLQDECSAIPVFLDD 97


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 254 FLKDPHQVLVSWLQRPVPYHQILKPS 177
           F K     ++  L  PV YH  LKPS
Sbjct: 625 FNKSNVHEIIQLLNEPVKYHNFLKPS 650


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +2

Query: 263 VLLGPPGSGKGT 298
           V++GPPGSGK T
Sbjct: 6   VVVGPPGSGKST 17


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,312
Number of Sequences: 5004
Number of extensions: 56292
Number of successful extensions: 181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)