Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a09
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -2

Query: 258 EICHYRIAQHQWATTQIATFW 196
           ++C  R+A + W T  +   W
Sbjct: 172 QVCSLRMASYGWTTDDLVFLW 192


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 6/21 (28%), Positives = 11/21 (52%)
 Frame = -2

Query: 258 EICHYRIAQHQWATTQIATFW 196
           ++C  R+A + W T  +   W
Sbjct: 172 QVCSLRMASYGWTTDDLVFLW 192


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 574  PNANMDKMPTFCINISNVPRTP 509
            P  N  KMP+F   + ++P TP
Sbjct: 1139 PGPNGIKMPSFMEGMPHLPFTP 1160


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 4/10 (40%), Positives = 8/10 (80%)
 Frame = +1

Query: 271 CCVYRLCWVL 300
           CC +++CW +
Sbjct: 488 CCWWKICWTI 497


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 4/10 (40%), Positives = 8/10 (80%)
 Frame = +1

Query: 271 CCVYRLCWVL 300
           CC +++CW +
Sbjct: 541 CCWWKICWTI 550


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 378 WLVKLCTSSFSGLLIARVLCGI 443
           W +   + S +G+LI   +CG+
Sbjct: 656 WAIGAMSFSATGILITLFVCGV 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,900
Number of Sequences: 438
Number of extensions: 4470
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)