Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a08
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical p...    71   5e-13
Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical pr...    60   9e-10
Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.     28   5.8  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U21324-13|AAA62558.1|  357|Caenorhabditis elegans Hypothetical
           protein C35D10.2 protein.
          Length = 357

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 33/73 (45%), Positives = 47/73 (64%)
 Frame = +2

Query: 335 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 514
           E++ S    V N       QL F CQ AHGSP+G+I  ++N++ELY+ IA+C+  S +DI
Sbjct: 43  EESSSTIMTVVNPLMVAARQLKFACQMAHGSPVGIIDKWNNMEELYQSIADCFTISKDDI 102

Query: 515 LFCTLNTHKVDMK 553
           +F T+N  K DMK
Sbjct: 103 IFLTVNDFKPDMK 115


>Z68298-3|CAA92600.2|  357|Caenorhabditis elegans Hypothetical
           protein F44D12.4 protein.
          Length = 357

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 29/73 (39%), Positives = 44/73 (60%)
 Frame = +2

Query: 335 EDTESQSNGVDNSNGTQKSQLVFHCQQAHGSPLGLISGFSNVKELYEKIAECYEFSPEDI 514
           E+  S    V N       +L F CQ AHGSP+ +I  +++++ELY+ IA+ +  S +DI
Sbjct: 43  EEPSSSIMPVVNPLMVAAKELKFPCQLAHGSPVAIIDKWNDMEELYQSIADFFAISKDDI 102

Query: 515 LFCTLNTHKVDMK 553
           +F T+N  K DMK
Sbjct: 103 IFLTVNDFKPDMK 115


>Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical
           protein R03C1.3a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 501 ENS*HSAIFSYNSLTLEKPEMRPNG 427
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


>AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 501 ENS*HSAIFSYNSLTLEKPEMRPNG 427
           EN  HS+ +S ++L LEK E  P+G
Sbjct: 20  ENRKHSSTYSISNLLLEKKESSPSG 44


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/65 (27%), Positives = 35/65 (53%)
 Frame = +3

Query: 279 YLKRKRLNTRRHRYHPHQ*KILNHSLMESIIATVRRSHNWSSTVSKLTEVHWASSLVSLT 458
           YL  +  +TRR   +  + + L+H  +   I+  RR+   S+ +S L+E   ++  +S+T
Sbjct: 310 YLSLRGTDTRRLEANNEREEFLDHYRIPRKISVHRRTTTTSTCIS-LSETSGSNQDISVT 368

Query: 459 SKNYM 473
           S  Y+
Sbjct: 369 SAAYL 373


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,791
Number of Sequences: 27780
Number of extensions: 262388
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)