Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a03
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.77 
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   2.3  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   2.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.4  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.4  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   5.4  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    25   9.5  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 451 KEVEATENEWNEGRNQTVKALEDAIEGEKTEXWRAQGQELLIXAKKEN 594
           K  E  E EWN+ +N+     E+A+E E T     Q Q+LL    +EN
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +1

Query: 439  AWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEXWRAQGQELLIXAKKENVLLQLEAA 618
            A LD E+E  + +  E RN+T  ++E A E +         Q  ++ A+   +L  LE  
Sbjct: 913  AELDNEIERLQMQIAEWRNRTGVSVEQAAE-DYLNAKEKHDQAKVLVARLTQLLQALEET 971

Query: 619  YRER 630
             R R
Sbjct: 972  LRRR 975


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 457 VEATENEWNEGRNQTVKALEDAIEGEKTEXWRAQGQELL 573
           V+ T +  +E   QTV+ L  +IEG     W A  ++L+
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLI 188


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 414 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHT 313
           VS +  D Q QS V   LHY + + +   C +HT
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHT 163


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +1

Query: 310 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 480
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 157 RLVLCTRSVCSHLNAKPRATTL 92
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 116 RKATRDNIIYRIFYKLFPKCEDRTVXSTLH*CC 18
           R  + +N I R+  +LFP CED      LH  C
Sbjct: 200 RYVSNENYIDRLI-ELFPLCEDLENTDDLHRLC 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,308
Number of Sequences: 5004
Number of extensions: 52741
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)