Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a03
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    64   8e-11
Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical pr...    63   1e-10
U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    32   0.41 
AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B prote...    32   0.41 
Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
 Frame = +1

Query: 205 ARPVRGEPGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGL 384
           ARP+   P K RL  +P+ WF  F   TGV+GPY F  GL  +L +KE++V E + +  +
Sbjct: 99  ARPMY--PPKSRLLMMPDSWFTPFQKVTGVSGPYLFFGGLFAFLVNKELWVFEEQGHMTV 156

Query: 385 SLLVMVYVAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEXWRAQG- 561
             ++   +     G K+   L    +   N + +G  Q  + L++A+E +KT   + +  
Sbjct: 157 GWILFYLLVTRTAGYKIDQGLYNGYQERVN-FFKGLIQ--EDLKEAVEFKKTSAKQTESL 213

Query: 562 ---QELLIXAKKENVLLQLEAAYRERL 633
              +E    A KE++ LQLEA YR+ +
Sbjct: 214 NSIKESYPTALKESMALQLEATYRKNV 240


>Z46242-8|CAA86329.1|  301|Caenorhabditis elegans Hypothetical
           protein F35G12.10 protein.
          Length = 301

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
 Frame = +1

Query: 226 PGKVRLGFIPEEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVY 405
           P K RL  +P+ WF  F   TG +GPY F  GL  +L +KE++V E + +  +  ++   
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYL 161

Query: 406 VAHVKFGPKLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEXWR----AQGQELL 573
           +     G K+ A L K+ +     + +G  Q  + L++A++  KT   +    A  +E +
Sbjct: 162 LVSRTAGYKIDAGLYKDYQERVG-FFKGLIQ--EDLKEAVDFRKTSAAQTASFAALKEGM 218

Query: 574 IXAKKENVLLQLEAAYRERL 633
             + K+++ LQLEAAYR+ +
Sbjct: 219 PTSLKDSMQLQLEAAYRKNV 238


>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 478 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 320
           +R R LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 315

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -2

Query: 478 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 320
           +R R LQ P P T   +   + +EP T     T    I  P    P CT +L D
Sbjct: 26  LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79


>Z70284-20|CAA94286.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 345 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 199
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>Z70271-8|CAA94238.2|  543|Caenorhabditis elegans Hypothetical
           protein W08D2.8 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 345 LAAQVCCQTHTKSVRTRHTSFRVEELEPFFRNKAKSNFAWLTPYRASKG 199
           LAA+ C  T   +V+       V E E   ++  K+   WL+P   SKG
Sbjct: 302 LAARNCLITKELNVKISDFGLSVNESETKMKSLKKAPIRWLSPETFSKG 350


>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
           protein K02B12.5 protein.
          Length = 1204

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +1

Query: 442 WLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEX----WRAQGQELLIXAKKENVLLQL 609
           W DK  E    +W +   +T    E  I+ E  E     W+   +++L   K+EN LL+L
Sbjct: 447 WSDKRNEENAIKWKQ---ETDNIPEVVIKNEDDETDVLYWKLSDEDVLERCKEENELLKL 503

Query: 610 EAAYRERL 633
           +     +L
Sbjct: 504 DLLTEHQL 511


>AL023845-6|CAA19536.1|  168|Caenorhabditis elegans Hypothetical
           protein Y51B9A.8 protein.
          Length = 168

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 315 CGSGNIPVQQGNLCNGARILLRTVTAGHGVCG 410
           C +GN  V  G+ C  A+++  T+T   G+ G
Sbjct: 36  CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical protein
            C14C10.5 protein.
          Length = 1908

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
 Frame = +1

Query: 256  EEWFQFFHSKTGVTGPYTFGVGLATYLCSKEIYVMEHEY--YSGLSLLVMVYVAHVKFGP 429
            EEW  F        G YT+   L TY   KE   ++  Y  +S +   ++      KF  
Sbjct: 1314 EEWDSFQFCSKQHWGIYTWPAKLITYAPLKEQTAIDRSYEQFSEVEKYIVDMFQDEKFMT 1373

Query: 430  KLAAWLDKEVEATENEWNEGRNQTVKALEDAIEGEKTEXWRAQGQELLIXAKKE 591
            +L      E++  +  +N       + L        T  +R Q  E+L+ + KE
Sbjct: 1374 RLRELFSIEMKKEDEVFNAVHFSLFQGLFRCYGDVLTHAFRTQ-LEILLASSKE 1426


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 493 SDLRSIRSRSLQLPCPTKQPILVRISREP 407
           SD+ S+R++  ++P  T QP+L    ++P
Sbjct: 541 SDIESVRNKKRKVPATTSQPMLALDLKKP 569


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 493 SDLRSIRSRSLQLPCPTKQPILVRISREP 407
           SD+ S+R++  ++P  T QP+L    ++P
Sbjct: 829 SDIESVRNKKRKVPATTSQPMLALDLKKP 857


>AF016423-8|AAB65319.1|  409|Caenorhabditis elegans Hypothetical
           protein F40A3.7 protein.
          Length = 409

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 243 WLYS*RMVPILPLENWCDGSLHFWC 317
           W Y    V ++ L NWC    H WC
Sbjct: 95  WFYLHSKVHLISLANWCSSVAH-WC 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,943,127
Number of Sequences: 27780
Number of extensions: 316196
Number of successful extensions: 932
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)