Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt16a01
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0350 + 16899076-16900164                                         28   3.8  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   5.0  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   5.0  
05_04_0258 + 19490256-19491569                                         27   5.0  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    27   6.6  
12_02_0629 - 21360831-21361310,21361391-21361663,21362212-213624...    27   8.7  

>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 21/41 (51%), Positives = 22/41 (53%)
 Frame = -2

Query: 221 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 99
           AR P  V  SG + WR  R D A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108


>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 259  LVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 158
            L ++ RQ  P+V+ G  C ++G D I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 218 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 126
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


>05_04_0258 + 19490256-19491569
          Length = 437

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = +3

Query: 210 WAPCTT--IGSTC--LDCTTKQV-CTKVGGIQRACLDPTLPYCXLGECSATP 350
           W  C T  + S+   + C +K    TK GG   +C     P C  G CS  P
Sbjct: 73  WVDCDTGYVSSSYARVPCGSKPCRLTKTGGCFNSCFGAPSPACLNGTCSGFP 124


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 TCHRWCRRLGRLEQWRSQPLDTSMDR 187
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


>12_02_0629 -
           21360831-21361310,21361391-21361663,21362212-21362488,
           21362590-21362735,21363207-21363416
          Length = 461

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 388 ATDAPEAGSHPSAGVA-EHSPRXQ*GRVGSRHALCIPP 278
           A  AP   +  +AGVA  H PR    R+  RH   +PP
Sbjct: 32  AAAAPGLDAVAAAGVAGAHGPRRAGARLRERHGAPLPP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,045,338
Number of Sequences: 37544
Number of extensions: 260346
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)