Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15p24
         (517 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 199 KLLIEGKTKQVFDVPDQP 252
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 199 KLLIEGKTKQVFDVPDQP 252
           ++ +EG  K+ F+VP QP
Sbjct: 191 QVFLEGSQKRKFNVPLQP 208


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 64  FIKGPHCYIHSSRDPHRI 117
           F  G H Y+H+   P+++
Sbjct: 124 FYNGKHSYVHTITVPNKL 141


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +1

Query: 64  FIKGPHCYIHSSRDPHR 114
           F  G H Y+H+   P++
Sbjct: 92  FYNGKHSYLHTITSPNK 108


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 290 AVILSLLRSKQYPGWSGTSNTCLVLPSMRSLP 195
           A  L+L++++     +GTS T    P+  S+P
Sbjct: 27  AASLTLVKAETPEHLAGTSTTAAATPTPPSVP 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,996
Number of Sequences: 438
Number of extensions: 3115
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)