Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15p16
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.19 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 189 FYCFNLYIEFKSKCIINPTILFISVKDFAIMTISTMNYVIYSIKNLNF 332
           F+  NL+  F S+CI    I+F +V     +  S MN VIY+  + +F
Sbjct: 351 FFVVNLWSGFCSQCIWQEKIVFAAVTWLGWIN-SGMNPVIYACWSRDF 397


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 497  PAGEVTWKIR 526
            PA EVTWK+R
Sbjct: 1304 PAPEVTWKVR 1313


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 272 KIFDGNEQNRRIYDTFRFKLNI*IKTIKRILYNSSLQT 159
           KIF+ N   +R+YD      N   + I+ ++ N+   T
Sbjct: 26  KIFEANPDTKRLYDDLLSNYN---RLIRPVMNNTETLT 60


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 607 CRYNIVSSGTFIKLC 563
           CRY   +SG F  LC
Sbjct: 140 CRYVTTTSGMFEALC 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,560
Number of Sequences: 438
Number of extensions: 3397
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)