Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15o08
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           24   0.78 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   2.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.2  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.3  

>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 146 EQWRSQPLDTSMDRIRSLVPAVGS 217
           E+ R   L+ + DR+R +VP++G+
Sbjct: 6   ERRRMNSLNDAFDRLRDVVPSLGN 29


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 471 NKKCNQKCFFTIM*SCLINMNISKFY 548
           NKKC +KC    +  C    + ++FY
Sbjct: 238 NKKCCEKCGLKKIEFCRPTFSAARFY 263


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = +3

Query: 231 GSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGEC 338
           G TC+D     +CT   G   +     +  C+   C
Sbjct: 35  GGTCIDGINSYICTCKPGFTGSNCQNRINLCDSSPC 70


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 200 PGSGCDPWRYP 168
           P S CDPW  P
Sbjct: 30  PPSYCDPWYNP 40


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,647
Number of Sequences: 336
Number of extensions: 2548
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)