Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15n19
(651 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 24 1.5
AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex det... 23 2.6
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.6
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 23 3.4
DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex det... 22 4.5
DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex det... 22 4.5
DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex det... 22 4.5
DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex det... 22 4.5
DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex det... 22 4.5
DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex det... 22 4.5
DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex det... 22 4.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 22 4.5
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 5.9
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 5.9
DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex det... 22 5.9
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 5.9
AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 22 5.9
AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 22 5.9
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.8
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 7.8
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 90 INNNEIISQNDKTCNFYGHIHRNNNNNWQ 4
I+NN +S N N Y + + N N N++
Sbjct: 82 ISNNNSLSNNYNYNNNYNNYNNNYNTNYK 110
>AY569721-1|AAS86674.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNN 16
+IIS +CN+ + + NNN
Sbjct: 302 KIISSLSNSCNYSNNYYNNNN 322
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.0 bits (47), Expect = 2.6
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 111 VRTLTSKINNNEIISQNDKTCNFYGHIHRNNNNNWQ 4
+ +L++K +N N+ N Y + + NN NN++
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYK 350
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 22.6 bits (46), Expect = 3.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 87 NNNEIISQNDKTCNFYGHIHRNNNNN 10
+NN I+ + N + + NNNNN
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNN 248
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 87 NNNEIISQNDKTCNFYGHIHRNNNNN 10
NNN + N N G+ NNNNN
Sbjct: 244 NNNNNNNNNGANDNGNGNGASNNNNN 269
Score = 21.8 bits (44), Expect = 5.9
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 111 VRTLTSKINNNEIISQNDKTCNFYGHIHRNNNNN 10
+ T NN+ I + N T + + NNNNN
Sbjct: 216 LETCQRNSNNSTITAGNANTNASNNNNNNNNNNN 249
>DQ325101-1|ABD14115.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325100-1|ABD14114.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325099-1|ABD14113.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325098-1|ABD14112.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325097-1|ABD14111.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325096-1|ABD14110.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>DQ325095-1|ABD14109.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+IIS N+ + + NNNNN+
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNNNY 103
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = -3
Query: 376 GSRGSVGRR 350
GSRGSVGRR
Sbjct: 1835 GSRGSVGRR 1843
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 102 LTSKINNNEIISQNDKTCNFYGHIHRNNNNN 10
+ S ++NN S + N Y + + NN NN
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 102 LTSKINNNEIISQNDKTCNFYGHIHRNNNNN 10
+ S ++NN S + N Y + + NN NN
Sbjct: 81 IISSLSNNYKYSNYNNYNNNYNNNYNNNYNN 111
>DQ325102-1|ABD14116.1| 183|Apis mellifera complementary sex
determiner protein.
Length = 183
Score = 21.8 bits (44), Expect = 5.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 78 EIISQNDKTCNFYGHIHRNNNNNW 7
+I+S N+ + + NNNNN+
Sbjct: 80 KIVSSLSNNYNYSNYNNYNNNNNY 103
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 111 VRTLTSK-INNNEIISQNDKTCNFYGHIHRNNNNN 10
+ +L++K I+NN N N+ + + NN NN
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNYNN 349
>AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 399 QGGPTNYWARGDPW 358
QG +W+RG+ W
Sbjct: 16 QGTQAQHWSRGNTW 29
>AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein
protein.
Length = 427
Score = 21.8 bits (44), Expect = 5.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -1
Query: 399 QGGPTNYWARGDPW 358
QG +W+RG+ W
Sbjct: 16 QGTQAQHWSRGNTW 29
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 24 YGECVHKNYTSYHSEKLFHCYLFYL*VFLRYEL 122
Y CV +T+ + + LFYL V LR +L
Sbjct: 102 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDL 134
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 7.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 24 YGECVHKNYTSYHSEKLFHCYLFYL*VFLRYEL 122
Y CV +T+ + + LFYL V LR +L
Sbjct: 155 YATCVLSCWTNIYYIIILAWALFYLLVSLRIDL 187
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 7.8
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 366 PREPNSWSVRPVGRLPMLPVRIRHSRTFSKNT*VMENVMEKATS 497
P+ NS ++ + LPM+PV + +T ++ V EK +S
Sbjct: 774 PQNTNSQAIPRIPILPMIPVYCVPVPQVNDST-ILSPVREKLSS 816
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,592
Number of Sequences: 438
Number of extensions: 4421
Number of successful extensions: 26
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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