Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15n11
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    26   0.26 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.46 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 591 WICFDHLNSTARMPPRTMKVSSRWIGR*ASMKYGFKYTSNRLPV 460
           W+ FD L+ TA +    M    R+      +KYG K T  R+ V
Sbjct: 117 WVSFDVLSCTASILNLCMISVDRFCAITKPLKYGVKRTPRRMIV 160


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 25/105 (23%), Positives = 39/105 (37%)
 Frame = -1

Query: 439 NWQYVDSFSIFH*RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAIIV*EHDANGFLAAFAL 260
           +WQ  D  S+        G  + +  ++++     H    + A IV    ++  L     
Sbjct: 240 HWQ--DQMSLPQMLADKIGKMVNQKFSELIQSKPQHARRKVLAGIVQTKGSDAELICVTT 297

Query: 259 EQDCVTTEELKLLHFGL*KCHD*VVIADCFFDNETVGSVLATEDR 125
              CV+ E L +    L  CH  VV   C  +       L TEDR
Sbjct: 298 GTKCVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 105 LLLSAILFKIYC*NLRTIIIFIT 37
           +LLS+  F++    L TI+IF+T
Sbjct: 1   MLLSSAWFEVIAAVLLTILIFVT 23


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 124 GR*IIRAFIICHFIQNLLLESKNY 53
           G  +++  IIC  + N+  ++K+Y
Sbjct: 88  GAILVQVAIICEGVMNIQKDNKSY 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,230
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)