Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15m24
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    29   0.33 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    28   1.0  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   2.3  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    26   4.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   5.4  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   7.2  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   9.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   9.5  

>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 463 LLPAFPRTEVTPDPTFHL*TRVLRSDEPVLVL 368
           LLP +P+ + TPD  F + T +    EPV ++
Sbjct: 105 LLPDYPKKKATPDAVFAMYTTISNYPEPVTLV 136


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 21/87 (24%), Positives = 35/87 (40%)
 Frame = +1

Query: 265 YRKKREVYDPNIDHHRVKRCCEYEKSRKRRSPAVRAPRQVHHYEVHEFTDERLGPASPPY 444
           YR  R+ Y  + D  R     EY +    RSP+ R  R+ +    +E    +   A+P  
Sbjct: 266 YRPGRDEYRRSRDDGRPSHDDEYRRDAYSRSPSPRRDREENRSPAYE--GSKSYSAAPEA 323

Query: 445 EEMLAASADHYQRYAVPPKSARYLDHS 525
               +A  + Y + A   +     +HS
Sbjct: 324 SMESSAPTESYDKPAASEEQQPLQNHS 350


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 352 RSPAVRAPRQVHHYEVHEFTDERLGPASPPYEEMLAASADHYQRYAVPPKSARYLD 519
           R P+   P     Y  +E   E     S  Y  +LAA +D  + +++PP+   Y +
Sbjct: 208 RLPSYTKPDDDTVYHFNEDFKEYGASRSEFYPYLLAAVSDRGEHHSIPPEDTPYFN 263


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 374 QDRFITTKYTSLQMKGWVRRHLRTRKCWQQVLIII 478
           +++ +TT   SL    W   +  T +C+QQV+ I+
Sbjct: 41  KEKLLTTSSNSLTHYQWYLIYKHTCRCFQQVVRIV 75


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 203 STNRGTKRKMSTSPTTTMMRATGRKEKCMTPT*ITI-ESNVAVN 331
           STN      + T+PTTT + +T       TP    I  SN +VN
Sbjct: 145 STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTSVN 188


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 82  HTGFVAKIATRTVLVQASVQFGR 14
           HT +++K+A RT+L  AS +F R
Sbjct: 98  HTDWMSKVAIRTLLSIASPKFTR 120


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 270  PVARIIVVVGLVDIFLFVPRFVDDLS 193
            P+ R  +V+GL D+ +    F+D++S
Sbjct: 975  PIIRNNLVIGLADLTVCFNHFIDEIS 1000


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 26   NARLH*NSSSRDFRNESCVSTVKGS*VYNKKTKILQRIDSARCVR 160
            ++R H NSSS+ +    CV T+           IL+R+      R
Sbjct: 960  DSRFHFNSSSKSWLYRGCVITINAEYETGDYQMILRRMSGTTIYR 1004


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -2

Query: 459 CQHFLVRR*RRTQPFICKLVYF-VVMNLSW 373
           C H +  R  RT  F+C + Y   V+ + W
Sbjct: 697 CTHLIAPRILRTSKFLCSIPYGPCVVTMDW 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,329
Number of Sequences: 5004
Number of extensions: 37472
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)