Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15m24
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   0.65 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   4.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   4.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   4.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 0.65
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 385 HHYEVHEFTDERLGPASPPYEEMLAASADHYQ 480
           HHY       +   P  PPY  M   +A +YQ
Sbjct: 64  HHYGAAGSQQDMPYPRFPPYNRMDMRNATYYQ 95


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 391 YEVHEFTDERLGPASP 438
           YE+H+ + ++L PA+P
Sbjct: 264 YEMHQISKKKLSPATP 279


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 170 CCWWRSRW 193
           CCWW+  W
Sbjct: 488 CCWWKICW 495


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +2

Query: 170 CCWWRSRW 193
           CCWW+  W
Sbjct: 541 CCWWKICW 548


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173 CWWRSR-WLRSSTNRGTKRKMSTSPTTTMMRATGRKEK 283
           C W +R W    TN G     +     T +   G +EK
Sbjct: 301 CTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEK 338


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173 CWWRSR-WLRSSTNRGTKRKMSTSPTTTMMRATGRKEK 283
           C W +R W    TN G     +     T +   G +EK
Sbjct: 301 CTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEK 338


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 173 CWWRSR-WLRSSTNRGTKRKMSTSPTTTMMRATGRKEK 283
           C W +R W    TN G     +     T +   G +EK
Sbjct: 301 CTWAARPWQGYMTNNGVNNVEAVQKELTDLGKLGEEEK 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,646
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)