Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15m14
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.088
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.088
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.27 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.82 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   1.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   3.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 298 IVGRPFNLNCTLA-VPLDSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDD 474
           + G    L C +A  P++  EI W++ +  L +      R ++   G T  I     + D
Sbjct: 531 VAGETLRLKCPVAGYPIE--EIKWERANRELPDDL----RQKVLPDG-TLVITSVQKKGD 583

Query: 475 YGNYTCGLKNQTGH 516
            G YTC  +N+ GH
Sbjct: 584 AGVYTCSARNKQGH 597



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 472  DYGNYTCGLKNQTGHIK 522
            D G+YTC ++N  G+ K
Sbjct: 1378 DGGDYTCQVENAQGNDK 1394


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +1

Query: 298 IVGRPFNLNCTLA-VPLDSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDD 474
           + G    L C +A  P++  EI W++ +  L +      R ++   G T  I     + D
Sbjct: 531 VAGETLRLKCPVAGYPIE--EIKWERANRELPDDL----RQKVLPDG-TLVITSVQKKGD 583

Query: 475 YGNYTCGLKNQTGH 516
            G YTC  +N+ GH
Sbjct: 584 AGVYTCSARNKQGH 597



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 472  DYGNYTCGLKNQTGHIK 522
            D G+YTC ++N  G+ K
Sbjct: 1374 DGGDYTCQVENAQGNDK 1390


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 331  LAVPLDSFEIVWKKNSVPLGEVAGLKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQT 510
            LAV + + E+ WK      G V    +R     +G  F IK   +  D G Y+C ++N  
Sbjct: 1299 LAVGVPAPEVTWKVR----GAVLQSSDRLRQLPEGSLF-IK-EVDRTDAGEYSCYVENTF 1352

Query: 511  GH 516
            GH
Sbjct: 1353 GH 1354


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 295 YIVGRPFNLNCTL 333
           YI G PFN NC++
Sbjct: 676 YIGGNPFNCNCSM 688


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 255 RAHPRTGQL*GLEVHRWTPVQFEL 326
           R  P +  L  LEV RW P++  L
Sbjct: 112 RTEPLSPHLLNLEVERWRPLRSRL 135


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -2

Query: 395 TSPRGTLFFFHTISNESSGTARVQFKLNGRPTMYFKAS*LTSSWVGSVTG 246
           TS R   +F+   S+E+S  A  +FK   +    F      + W+ S  G
Sbjct: 23  TSHRPAWWFWTATSHEASAPAEGKFKTVSKVPGPFSLPIFGTRWIFSCIG 72


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 216 YECPKLVNDCSGHRAHPRTGQL*GLEVHRWTPV 314
           +EC K  N C  HR   R      L + +W+ +
Sbjct: 98  FECSKTSNPCLPHRNSDR-----DLNIRKWSSI 125


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 387 RRGGRPQGAVRAPEQGAHLPDQGP 458
           R GG P GA   P +     + GP
Sbjct: 409 REGGPPTGATTGPNEIVTCTNCGP 432


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 387 RRGGRPQGAVRAPEQGAHLPDQGP 458
           R GG P GA   P +     + GP
Sbjct: 395 REGGPPTGATTGPNEIVTCTNCGP 418


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 387 RRGGRPQGAVRAPEQGAHLPDQGP 458
           R GG P GA   P +     + GP
Sbjct: 429 REGGPPTGATTGPNEIVTCTNCGP 452


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 387 RRGGRPQGAVRAPEQGAHLPDQGP 458
           R GG P GA   P +     + GP
Sbjct: 378 REGGPPTGATTGPNEIVTCTNCGP 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,309
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)