Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15m06
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    50   2e-07
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    43   3e-05
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    35   0.012
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    33   0.028
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    31   0.11 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    31   0.11 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    31   0.20 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    29   0.61 
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    29   0.80 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   1.8  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.3  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    26   4.3  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    25   7.5  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    25   9.9  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   9.9  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
 Frame = +1

Query: 343 TGMAFGF-SAVALPQLQNPNSTL--FISEDQASWIASLSSAGTPIGCILSGYLMDLIGRR 513
           +G+ FG+ + V    L    S L   +S  Q   I S +S    I    SG+L D +GR+
Sbjct: 91  SGLLFGYDTGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRK 150

Query: 514 XXXXXXXXXXXXGWILISTSVNIPMMYIGRLLVGFGSGMVGAPARVYTCEV 666
                       G ++++ S N+ MM +GR +VG+G G+      +Y  E+
Sbjct: 151 RLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITEL 201


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 29/118 (24%), Positives = 53/118 (44%)
 Frame = +1

Query: 313 SFLANLGTINTGMAFGFSAVALPQLQNPNSTLFISEDQASWIASLSSAGTPIGCILSGYL 492
           +F A +G +  G   G  + AL  +        ++     +I S +S G  +G I++G L
Sbjct: 91  AFAAGIGGLLFGYDTGVISGALVVIGTSLGGHELTNGGKEFITSATSLGALLGGIIAGAL 150

Query: 493 MDLIGRRXXXXXXXXXXXXGWILISTSVNIPMMYIGRLLVGFGSGMVGAPARVYTCEV 666
            D  GR+            G I+  T+ ++  M +GR ++G+G G+      +Y  E+
Sbjct: 151 ADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLYLSEI 208


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = +1

Query: 391 NP-NSTLFISEDQASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWILIS 567
           NP   T   S  +   I  + + G+  GCILS  LMD IG+R            G IL  
Sbjct: 45  NPVTDTYSYSSARQGLITGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQV 104

Query: 568 TSV-NIPMMYIGRLLVGFGSGMVGAPARVYTCEV 666
           T+V +   + + ++  G   G +   A  +  EV
Sbjct: 105 TAVPSWVQIMVAKIWTGLAIGALSVLAPGFQSEV 138


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 33.5 bits (73), Expect = 0.028
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +1

Query: 403 TLFISEDQASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWIL-ISTSVN 579
           T   S  +   +  + + GT +GC+LS  L D  G+R            G I+ ++T  +
Sbjct: 50  TYSYSSARQGLLVGMVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPS 109

Query: 580 IPMMYIGRLLVGFGSGMVGAPARVYTCE 663
              M + ++  G G G +   A  Y  E
Sbjct: 110 WVQMMVAKIWTGLGIGALSVIAPGYQSE 137


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +1

Query: 391 NP-NSTLFISEDQASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWILIS 567
           NP   T   S  +   I  + + G+  GC++S    D IG+R            G I+  
Sbjct: 45  NPVTDTYSYSSARQGLITGMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQV 104

Query: 568 TSV-NIPMMYIGRLLVGFGSGMVGAPARVYTCEV 666
           T+V +   + + ++  G G G +   A  Y  EV
Sbjct: 105 TAVPSWVQIMVAKIWTGLGIGALSVLAPGYQSEV 138


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 436 IASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWILISTSV-NIPMMYIGRLLV 612
           I  + + G+  GC LS  LMD IG+R            G IL  T+V +   + + ++  
Sbjct: 61  ITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWT 120

Query: 613 GFGSGMVGAPARVYTCEV 666
           G   G +   A  +  EV
Sbjct: 121 GLSIGALSVLAPGFQSEV 138


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +1

Query: 478 LSGYLMDLIGRRXXXXXXXXXXXXGWILISTSVNIPMMYIGRLLVGFGSGMVGAPARVYT 657
           L G L D+ GRR            G      S ++P + + R L G G G +G  + + +
Sbjct: 85  LYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSIIS 144

Query: 658 CEV 666
            ++
Sbjct: 145 SDI 147


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +1

Query: 412 ISEDQASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWILISTSV-NIPM 588
           +S  +   +  + + G+  GCI+S  + D  G+R            G I+  T+V +   
Sbjct: 57  LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQ 116

Query: 589 MYIGRLLVGFGSGMVGAPARVYTCE 663
           + + ++  G G G +   A  Y  E
Sbjct: 117 IMVAKIWTGIGIGALSVLAPGYQSE 141


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = +1

Query: 415 SEDQASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWIL-ISTSVNIPMM 591
           S  +   I  + + G+  GC+LS  + D IG+R            G I+ ++T  +   +
Sbjct: 22  SSSRQGLITGMVNVGSFFGCLLSSPVADKIGKRLSIIVWTTVYLIGIIIQVTTVPSWVQI 81

Query: 592 YIGRLLVGFGSGMVGAPARVYTCEV 666
            + ++  G   G +      Y  EV
Sbjct: 82  LVAKIWTGLSIGALSVITPGYQSEV 106


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 631 PYPNRSQPAAYLYTSWEYLQRSKSESIRE 545
           P+P++  PAAY+     +   S+ +S+RE
Sbjct: 41  PHPHKEHPAAYVAAKTGFNATSRRQSVRE 69



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 63   Y*SRASQSSCSDIYQVHHHFSDNLHTFDTITERTNCDNNDGREERISA 206
            Y +R   SS S       H++D   T D I  +T   + DG +E+ ++
Sbjct: 934  YSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTS 981


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/81 (20%), Positives = 29/81 (35%)
 Frame = +1

Query: 424 QASWIASLSSAGTPIGCILSGYLMDLIGRRXXXXXXXXXXXXGWILISTSVNIPMMYIGR 603
           Q SW A+           L G   D+ GR+            G  L  TS ++  +   R
Sbjct: 125 QVSWTATAYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAAR 184

Query: 604 LLVGFGSGMVGAPARVYTCEV 666
            + G G G + +   +   ++
Sbjct: 185 AIAGIGGGGMNSTVSILMSDI 205


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 251 STFLVIVAGTPFLMNGADSFFSSVIVITVCPFS 153
           ST+   ++GTP + NG + F+S +  + + P+S
Sbjct: 560 STYRWCLSGTP-MQNGVEEFYSLIKFLRIKPYS 591


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 163 QTVITMTEEKNESAPFIKNGVPATITKKVLIEK 261
           Q +   T +K ES  F+   VP  +  K+L+EK
Sbjct: 533 QVLRNFTCQKEESVDFLLKMVPMELLAKILLEK 565


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = -1

Query: 605 SLPIYIMGI---FTEVEIRIHPRMRGISVSI 522
           S+P+Y +G    + E    +HPR++G+S+++
Sbjct: 194 SIPLYHIGFNFAYAERHFVMHPRVKGVSMAV 224


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 596 IYIMGIFTEVEIRIHPRMRGISVSIK 519
           I + GIF  V +R++PRMR +    K
Sbjct: 410 IEVTGIFRCVPVRLNPRMRTVKSLFK 435


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 335 VPKLAKNEAKTCFRAFPRPSFPGLHFSIST 246
           +P  A   +K CF     P F GLHF+ ST
Sbjct: 244 IPGDAVEVSKVCFN---HPEFAGLHFTGST 270


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 394 PNSTLFISEDQASWIASLSSAGTPIGCILSGYLMDL 501
           P++ L   +   SW   L S G     +  GYL+DL
Sbjct: 347 PSTILETLQQLVSWEIQLDSVGFKDIAVYQGYLLDL 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,965
Number of Sequences: 5004
Number of extensions: 59877
Number of successful extensions: 188
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)