Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15l13
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           25   0.50 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.1  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 197 CVIGAGIAGLSSARYLKEEGIDFVVFEATKYIGG 298
           CV  A IAG     + K EG +    E TK + G
Sbjct: 16  CVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQG 49


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 191 RVCVIGAGIAGLSSARYLKEEGIDFVVFE--ATKYI 292
           R+C++G+G  G + A+ +     +F  FE   T Y+
Sbjct: 6   RICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYV 41


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = +3

Query: 300 RGVTIQELVPM------KMVYHCTPACTSIYTRIYQNQ 395
           +G+TIQE          K V   TPA  +I T IY+NQ
Sbjct: 606 KGITIQEPPQWHTRSTEKRVSAGTPAAFNISTTIYENQ 643


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 438 DGIPSGNGKPLNSIV 394
           DG P GNG P N ++
Sbjct: 144 DGSPGGNGGPRNGLL 158


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 438 DGIPSGNGKPLNSIV 394
           DG P GNG P N ++
Sbjct: 144 DGSPGGNGGPRNGLL 158


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 104 YLKMCNN*NFFSVCTLNTLD 163
           +L+M  + NF  VC++N ++
Sbjct: 122 WLQMTKHHNFIKVCSVNDVN 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,382
Number of Sequences: 438
Number of extensions: 4289
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)