Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15k01
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      146   2e-37
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  146 bits (353), Expect = 2e-37
 Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 5/227 (2%)
 Frame = +2

Query: 2    VLDEADRMLDMGFEPQIRKII--EQIRP--DRQVLMWSATWPREVQNLAEEFLHDYIQIN 169
            VLDEADRMLDMGF P I K++  E + P  +RQ LM+SAT+P EVQ+LA  FL++Y+ + 
Sbjct: 352  VLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLFLA 411

Query: 170  IGSLELSANHNILQIVDVCEEWEKNDKXXXXXXXXXXXXXXXXXXFAETKRRVDDICKAI 349
            +G +  + +       +V    +K+                    F E K++ D I   +
Sbjct: 412  VGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTLGGTLVFVEMKKKADFIAVFL 471

Query: 350  NRAGWRALAIHGDKNQQDRDYVLNQFRHHXXXXXXXXXXXXRGLDVEDVKFVINYDYPNN 529
            +   +   +IHGD+ Q+ R+  L  F+              RGLD+++V  VINYD P  
Sbjct: 472  SENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKG 531

Query: 530  SEDYVHRIGRTGRSQNTGTAYTLFTPNNSAKAR-DLMSVLQEANQVV 667
             ++YVHRIGRTGR  N G A + F P   A  R DL+ +L++ANQ V
Sbjct: 532  IDEYVHRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 248 YHSSPIPHKHQQSGGCCGWPRAR 180
           Y+++   H    +GG C WPR +
Sbjct: 126 YYTTNESHACLSTGGSCYWPRGK 148


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 242 SSPIPHKHQQSGGCCG 195
           SSP   +HQ+ GGC G
Sbjct: 392 SSPDSARHQRIGGCNG 407


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 562 GTVPKHRHGLHTL 600
           G+ P H+HG HT+
Sbjct: 331 GSSPHHQHGNHTM 343



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 596 LFTPNNSAKARDLMSVLQEAN 658
           L+ P+N  K  DL   LQE++
Sbjct: 9   LWCPDNDGKMVDLTQCLQESS 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,745
Number of Sequences: 438
Number of extensions: 3796
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)