Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15i16
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.4  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.8  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.6  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
 Frame = +2

Query: 92  MFGRYHGELMVYLAIAYL---CNGLYSV-----NYIFAAEEISYRCKDELFENNTCGKIN 247
           MF      + V LAI +L   C+G  S+     +Y     +  ++CK  +  ++ CG + 
Sbjct: 1   MFAIQTIRIAVLLAIVFLFDKCSGYPSIRQGTTSYCLGCGDSCHKCKYGIAMSSACGIVQ 60

Query: 248 SSKCTEFVYDQPNSFV 295
            +K  + +   P +++
Sbjct: 61  CAKGPDELCGGPQNYL 76


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 545 KQGRKYRQRQLPRSR 501
           K+ RKYR+R   RSR
Sbjct: 54  KEYRKYRERSKERSR 68


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 545 KQGRKYRQRQLPRSR 501
           K+ RKYR+R   RSR
Sbjct: 54  KEYRKYRERSKERSR 68


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 182 RQKYNLRNTVHYTNTLW-PD 126
           R +Y   N +H+ + +W PD
Sbjct: 127 RSQYEFLNAIHHYDDIWLPD 146


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 182 RQKYNLRNTVHYTNTLW-PD 126
           R +Y   N +H+ + +W PD
Sbjct: 127 RSQYEFLNAIHHYDDIWLPD 146


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 182 RQKYNLRNTVHYTNTLW-PD 126
           R +Y   N +H+ + +W PD
Sbjct: 178 RSQYEFLNAIHHYDDIWLPD 197


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 182 RQKYNLRNTVHYTNTLW-PD 126
           R +Y   N +H+ + +W PD
Sbjct: 127 RSQYEFLNAIHHYDDIWLPD 146


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -3

Query: 150 LHKYAMARYTISSPWYRPNMRKFTKISSKNDVILSRVDSALHS*N 16
           L  Y++   T +SP   P+    T IS K+  +       LH  N
Sbjct: 373 LGNYSLVPTTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHN 417


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 573 VSTISTVRI*TGEKISPKAASKISNTTYNQYHADAL 466
           +  +  + I TGE I    +  +SN  YN     A+
Sbjct: 61  MENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTTAI 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,448
Number of Sequences: 438
Number of extensions: 4606
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)