Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15h19
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.2  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   7.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 248 LQNACIMMLSHKNTVNFVGIFFITSKFCGYIKRRSRSMGG 129
           ++NA I    H N  +       TSK   Y K RSR  GG
Sbjct: 155 IENAHIRRTLHMNRTSLK-----TSKIVSYPKSRSRKKGG 189


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 95  CWSGQPTRR 69
           CWSG+P++R
Sbjct: 838 CWSGEPSKR 846


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -3

Query: 95  CWSGQPTRR 69
           CWSG+P++R
Sbjct: 876 CWSGEPSKR 884


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 62  TTLILNIFYKDSRTSHMAP 6
           T +ILN+ Y+   T  MAP
Sbjct: 316 TIVILNVHYRKPSTHKMAP 334


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 262  TVKKKRNELFEKELEMMLGRD-IVLNENETKVNEIFM 369
            +V  + NE  +KE++++LG D I      T   E+F+
Sbjct: 1495 SVLSRENEAGQKEVKVLLGSDKIKFVPGTTSQPEVFV 1531


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 316 RASFPILFQIVHFFSSLLFRGLCCKTLAL 230
           R S  +   +    SSL+F  LC  TLAL
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL 43


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 316 RASFPILFQIVHFFSSLLFRGLCCKTLAL 230
           R S  +   +    SSL+F  LC  TLAL
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL 43


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 316 RASFPILFQIVHFFSSLLFRGLCCKTLAL 230
           R S  +   +    SSL+F  LC  TLAL
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL 43


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 316 RASFPILFQIVHFFSSLLFRGLCCKTLAL 230
           R S  +   +    SSL+F  LC  TLAL
Sbjct: 15  RLSSVLSLSLTSLASSLIFTILCILTLAL 43


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 62  TTLILNIFYKDSRTSHMAP 6
           T ++LN+ ++  +T  MAP
Sbjct: 325 TVVVLNVHFRSPQTHKMAP 343


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 62  TTLILNIFYKDSRTSHMAP 6
           T ++LN+ ++  +T  MAP
Sbjct: 325 TVVVLNVHFRSPQTHKMAP 343


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 431 NTSLNTKMMSRKLNCTS*LKKCQ 499
           N S++ KM+S  +N      KC+
Sbjct: 107 NISIDVKMLSECINANKSTDKCE 129


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 62  TTLILNIFYKDSRTSHMAP 6
           T ++LN+ ++  +T  MAP
Sbjct: 321 TVVVLNVHFRSPQTHVMAP 339


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 413 RLCRNPWSSSFVLS 372
           R C NPW++ + L+
Sbjct: 137 RTCGNPWNTRYCLT 150


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 413 RLCRNPWSSSFVLS 372
           R C NPW++ + L+
Sbjct: 190 RTCGNPWNTRYCLT 203


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 270 LYCFVGCVAKRLHY 229
           L CF  CV ++LH+
Sbjct: 52  LGCFEACVFQKLHF 65


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 183 KEDANKIDCVLMAEHHNASVLQH 251
           +++A KID  L  +H+N     H
Sbjct: 56  QKNATKIDFGLSIQHYNVDEYSH 78


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 264 CFVGCVAKRLHY 229
           CF  CV ++LH+
Sbjct: 54  CFEACVFQKLHF 65


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 192 ANKIDCVLMAEHHNASVLQHNPRN 263
           A+ IDCV    + NA V Q  PR+
Sbjct: 16  ASPIDCVDANWYKNALVYQIYPRS 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,751
Number of Sequences: 438
Number of extensions: 3540
Number of successful extensions: 21
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)