Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15h13
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   2.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 RGVSVQETKHGHEKGRWYNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTP 512
           + +SV+E + G+  G    D   +   G A   FT   I  +   QIS G+TP
Sbjct: 313 KNISVKELRRGYVAG----DSKNQPPRGAA--DFTAQVIVLNHPGQISNGYTP 359


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 RGVSVQETKHGHEKGRWYNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTP 512
           + +SV+E + G+  G    D   +   G A   FT   I  +   QIS G+TP
Sbjct: 24  KNISVKELRRGYVAG----DSKNQPPRGAA--DFTAQVIVLNHPGQISNGYTP 70


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 RGVSVQETKHGHEKGRWYNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTP 512
           + VSV+E + G+  G   N+  + A        FT   I  +   QIS G+TP
Sbjct: 313 KNVSVKELRRGYVAGDSKNNPPKGAA------DFTAQVIVLNHPGQISNGYTP 359


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 457 QGLPSLLTELRKFQEDIHR 513
           +G     TELRK + DIHR
Sbjct: 116 EGTQVSATELRKIKVDIHR 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,380
Number of Sequences: 438
Number of extensions: 3398
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)