Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15g09
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   7.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   7.9  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 183 GTRTRIRGSAV*LTNAAEKRGARLVCTHSLPSGTAS 290
           G RTR+ GS + L     +      C+ S P G AS
Sbjct: 285 GPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEAS 320


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 183 GTRTRIRGSAV*LTNAAEKRGARLVCTHSLPSGTAS 290
           G RTR+ GS + L     +      C+ S P G AS
Sbjct: 285 GPRTRLLGSVLALEAVTLEDNGIYRCSASNPGGEAS 320


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 221 KLHRGATNSCSCSNWLRQCENFGQTLTRMLCCPRI-TTRVPSHSSSHDT 78
           K HR ++ S +CS    +C   G   +    CP +     P  SSS  T
Sbjct: 281 KQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTT 329


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 273 PSGTASIRDTISPSSLGDSS 332
           PS  +S   ++SP+SLG  +
Sbjct: 93  PSSPSSFFSSVSPTSLGSEN 112


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 368 PM-FLGSRSKKLFYDFLTFMTTRIAMTYATV 457
           PM F G+R KK+  D L  +  R  M +  V
Sbjct: 183 PMGFYGTRGKKIILDALEELDKRGVMDFQIV 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,039
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)