Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15g05
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.71 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   3.8  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   3.8  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   3.8  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   3.8  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   3.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 141 LILPKITTLMETATNLSTTVHI-TWTLP 221
           L+LPK+T  +E    L+ TV I TW  P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 59  MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 151
           +IFV A  A+ +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 59  MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 151
           +IFV A  A+ +A G+G++     P +++ PP
Sbjct: 6   LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 188 IDNGAYYVDPPRRPYFKPT 244
           I   AY   PP  P F+PT
Sbjct: 157 IPPNAYRFRPPLNPRFEPT 175


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 188 IDNGAYYVDPPRRPYFKPT 244
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 188 IDNGAYYVDPPRRPYFKPT 244
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 188 IDNGAYYVDPPRRPYFKPT 244
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 188 IDNGAYYVDPPRRPYFKPT 244
           I   AY   PP  P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 65  FVLALLAMANAQGNG 109
           FV+ +L   +A GNG
Sbjct: 57  FVIGMLGFVSAMGNG 71


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 218  PRRPYFKPTPFPGARGGK 271
            P++P+  P   PG  G K
Sbjct: 1128 PQKPFTSPGGIPGPNGIK 1145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,328
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)