Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15g02
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.54 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   2.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   2.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   2.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   6.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 154 PILIDNGLAILENEKIERHIMKSVP 228
           PI +D+G+ IL++ K E   + S+P
Sbjct: 341 PIQLDDGIDILDDVKCEDERVISIP 365


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 190 NEKIERHIMKSVPGGHNLFXXDKEVASL-IXNL-YSKLKLVLVRKDEQ 327
           N  + RH++ S  G  N+F  D  + S  I ++ Y +  +  V K+++
Sbjct: 175 NYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDE 222


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 190 NEKIERHIMKSVPGGHNLFXXDKEVASL-IXNL-YSKLKLVLVRKDEQ 327
           N  + RH++ S  G  N+F  D  + S  I ++ Y +  +  V K+++
Sbjct: 175 NYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDE 222


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 190 NEKIERHIMKSVPGGHNLFXXDKEVASL-IXNL-YSKLKLVLVRKDEQ 327
           N  + RH++ S  G  N+F  D  + S  I ++ Y +  +  V K+++
Sbjct: 226 NYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDE 273


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 190 NEKIERHIMKSVPGGHNLFXXDKEVASL-IXNL-YSKLKLVLVRKDEQ 327
           N  + RH++ S  G  N+F  D  + S  I ++ Y +  +  V K+++
Sbjct: 175 NYLMRRHLILSCQGRLNIFPFDDPLCSFAIESISYEQTAITYVWKNDE 222


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 82  LKVTTVDMQKPPPDF 126
           L ++T  M +PPP+F
Sbjct: 370 LNLSTALMSQPPPNF 384


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 6.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 92  QQWTCR 109
           QQWTCR
Sbjct: 485 QQWTCR 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,891
Number of Sequences: 438
Number of extensions: 1841
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)