Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15f19
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.045
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|... 28 0.97
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.97
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 28 0.97
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 28 1.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.3
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 3.0
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 3.9
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 6.8
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 6.8
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 25 9.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.0
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 9.0
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.045
Identities = 27/97 (27%), Positives = 49/97 (50%)
Frame = +3
Query: 336 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 515
A+ T+ L +S AT + A ++ +L + + SS T++ +S ST+ SL
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
Query: 516 RATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSL 626
+TN S P+S +++ L +T+ S T++SL
Sbjct: 162 SSTNSTTSATPTSSATSS---SLSSTAASNSATSSSL 195
Score = 25.8 bits (54), Expect = 5.2
Identities = 24/96 (25%), Positives = 42/96 (43%)
Frame = +3
Query: 339 NGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLR 518
+ T+ LA+S T A S+ + A + + +S + N +S + + S++
Sbjct: 189 SATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS-- 246
Query: 519 ATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSL 626
+ V S +S STT ATS+ T+SL
Sbjct: 247 -STVSSSTPLTSSNSTTAATSASATSSSAQYNTSSL 281
>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 160
Score = 28.3 bits (60), Expect = 0.97
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 62 LFQYIRVLTRAMSTVAKSFEASQVVPDV-IPKAPAALLQVKY 184
LFQ + +LT S A ++ SQV+P + I A AL Q KY
Sbjct: 6 LFQSVGILTPCGSAGAIAYITSQVLPAILIGPADVALAQWKY 47
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -3
Query: 367 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 203
D + + A+C F + + + +S++ S +R+ ++ + ++ L W Q I +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497
Query: 202 NFDSAWVFH 176
FD+A +F+
Sbjct: 498 EFDNALIFY 506
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 28.3 bits (60), Expect = 0.97
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +2
Query: 278 YYTLAMTDPDAPSRKEPTFREWHHWLVGN--IQGNEVNSGETLSQYVGSGPP---EKTGL 442
+Y++ D D P+ + F +WL+ N I+ ++ +T + PP
Sbjct: 234 HYSVITLDLDVPNYETNRFETHCNWLLTNIPIEASKRVPIDTSKAFFQYRPPIVHRGEDK 293
Query: 443 HRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYD 613
HR + L+ +Q S + P +++ R F ++EF Y+L +P+ + + + +D
Sbjct: 294 HRILTLVLRQKSS-SISIP----SNALVRERFDLSEFCSIYDL-EPVGAHLWRSGWD 344
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -3
Query: 433 LFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCGFFTGRRIRVGHGQSVVL 275
LF H +G +AG L + VA P+ PFA FF GR+IR +VVL
Sbjct: 527 LFAVQMFHNMGVGWAGSLLGFIAVALIPM-PFAF--FFFGRKIREKSKMAVVL 576
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 541 FEIGTFVARSVSESRLVECELRWLF 467
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +2
Query: 140 DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSR 319
D+I K L++ +P G + LTP VK E V+ G+ + D P+
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE-EVEMYENMGEMTVDVIKATDLPAA 1052
Query: 320 KEPTFREWHHWLVGNIQGNEVNSGET 397
+ ++V +QG EV +T
Sbjct: 1053 DSNGKSD--PFVVFELQGEEVYRTKT 1076
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 551 FAKKYNLGDPIAGNFYEAQYDDYVPI 628
F K+Y DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +3
Query: 432 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 557
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 383 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 538
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +2
Query: 326 PTFREWHHWLVGNIQGNE--VNSGETLSQ 406
P+F+E HW+V ++ E + SG LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 6.8
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +2
Query: 317 RKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKLT 487
+K+ F + +W + +G+ + S E L +G PPE T + Y+ + YK QP
Sbjct: 2 QKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGF 60
Query: 488 FDEPRLTNTSSDKRANFKIAEFAKKY 565
F E L + K + FAK +
Sbjct: 61 FTEDALKMVGT-KPEDVMQVSFAKDW 85
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 408 YWDKVSPEFTSLPWMLPTSQWCHSRN 331
YW V+P T L L + WC + N
Sbjct: 23 YWPSVAPAATELISKLINAFWCQTLN 48
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 471 NHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRS 608
+++ S STS T A N I++ +SP S++ ++T+T +S
Sbjct: 131 DNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATTQS 176
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +1
Query: 334 SRMAPLAGWQHPGQRGKLRRNFVPVRGLWTSGKDRPAQIRVPLVQTTIEAHIRRAET 504
SR +A + Q+G L R+FVP + SG PA T EA ++ ET
Sbjct: 482 SRAGFVAALESRLQKGPLMRSFVPNKSKSPSGTKSPAS------GETSEAGVKETET 532
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 182 YPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQY 280
YP+GV G+E TP ++ E G++
Sbjct: 67 YPTGVTESYGDEYTPVDTASSGINQYSTEKGKF 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,341
Number of Sequences: 5004
Number of extensions: 59677
Number of successful extensions: 170
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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