Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15f11
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    40   4e-04
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    40   4e-04
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    34   0.020
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    29   0.74 
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   1.7  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.2  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   6.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   6.9  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.1  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +3

Query: 465 KAQRKDKGKTRIT-----AYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSN 608
           K+ RKD   T  T     A++++ KE    LLK +P ++ S +SK +GEMW N
Sbjct: 91  KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
 Frame = +3

Query: 465 KAQRKDKGKTRIT-----AYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSN 608
           K+ RKD   T  T     A++++ KE    LLK +P ++ S +SK +GEMW N
Sbjct: 91  KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 462 AKAQRK---DKGKTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNER 626
           AK+ RK   +  K  ++A+M ++ E R ++   +PD  F  +   LG+ W  +   ER
Sbjct: 5   AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTER 62


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 396 LYMMEKNSKKKLIVKDGRVIGRAKAQRKDK 485
           LY+M KN K+K   KD +     K Q+K+K
Sbjct: 24  LYLMNKNKKRKPEKKDDKEKSSKKVQKKNK 53


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 555  PDMDFSAIS-KRLGEMWSNVNYNERY 629
            PDM+ S +  KRL + W+ +  NE+Y
Sbjct: 1412 PDMEKSKVEHKRLAQEWAGLEVNEKY 1437


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 192 TPVKTYTTSRQEEPDYSIQETPQRPVEEVNTASGSE 299
           T + T+T+ +  E  Y+IQ +P   + +  T SGS+
Sbjct: 117 TAISTFTSGK--EASYAIQASPSTFLPDSTTTSGSQ 150


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 215 CGVCLDGCLAP 183
           C VCLD CLAP
Sbjct: 606 CSVCLDPCLAP 616


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/65 (23%), Positives = 25/65 (38%)
 Frame = +3

Query: 252 TPQRPVEEVNTASGSESDYYENNXXXXXXXXXXXXXXXXXXXRTPANSLYMMEKNSKKKL 431
           TP   + + NTA+ S   +Y  N                   ++ +N++   EK+SK   
Sbjct: 81  TPNNNIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNKSQSNNISSHEKSSKTTK 140

Query: 432 IVKDG 446
            V  G
Sbjct: 141 NVSPG 145


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 TYTTSRQEEPDYSIQETPQRPVEEVNTASGSESD 305
           +Y+   +EEPD    ++P+RP       S  ES+
Sbjct: 60  SYSDILEEEPDEDAYDSPERPSSTEEFISQDESN 93


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 520 RKRPAMNCLRNTLIWISRLYQNDLEKC 600
           RKR +++CL  + I  +RL +ND   C
Sbjct: 90  RKRQSVHCLSRSPIPSTRLKENDSRLC 116


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 211  VYVLTGVWRLNLVXXXXXXXXXXSLELFFLTRPLLDIPVTSKS 83
            VYV+ GVW ++ V           L  F+  +P   IP  SKS
Sbjct: 1109 VYVVAGVWPVSFVLLSVCILLYKGLPPFYRQKP-GSIPAFSKS 1150


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 171 RYRRATQSPLAWNSSF*PDHSSIYR*LLNLPASLY 67
           +YR AT +P  +     P H S+YR L N  ++ Y
Sbjct: 32  QYRSATDNPSLYQV---PTHGSLYRNLSNSASAYY 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,998
Number of Sequences: 5004
Number of extensions: 42934
Number of successful extensions: 106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)