Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15f11
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.5  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 363 QKPNCLIPSYQRFQHYSHNNQIRFPMQCSPPRPASEVFPGYCSQVPP 223
           Q+P+   P  Q   H S     + P + SPP P+    PG     PP
Sbjct: 14  QQPSSGAPGPQPSPHQSP----QAPQRGSPPNPSQGPPPGGPPGAPP 56


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 94  SPVYRGVVGLERRVP 138
           SP  RGVV   +R+P
Sbjct: 243 SPAIRGVVEFAKRIP 257


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 360 KPNCLIPSYQ 331
           +P C++P YQ
Sbjct: 50  RPECMVPEYQ 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,838
Number of Sequences: 438
Number of extensions: 3081
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)