Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15f10
(667 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 91 1e-19
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 48 1e-06
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 34 0.021
SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr 2|||M... 32 0.065
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 30 0.26
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 30 0.34
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 29 0.46
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar... 28 1.4
SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 3.2
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 4.2
SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.2
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 5.6
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 7.4
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 25 9.8
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 9.8
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 91.1 bits (216), Expect = 1e-19
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 386 IGCAHYKRRAKFVTPCCNKVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQPECQN 565
+GC+HY R K C++ Y CR+CH++ H R V ++C C Q C+
Sbjct: 140 LGCSHYMRNCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENMLCMICSKVQPAAQYCKY 199
Query: 566 CGVRFGKYTCLICNLFDDE-DKKQYHCDGCGICRV 667
C G+Y C C L+DD+ +K YHCD CGICR+
Sbjct: 200 CKNCMGRYYCNKCKLWDDDPNKSSYHCDDCGICRI 234
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 320 KEKSESVNGDSSTVAEQNGEKRIGCAHYKRRAK-FVTPCCNKVYICRYCHDENEQHYFNR 496
K++ +++N NG C HYK+ + F CC++VY C CHD ++ H F
Sbjct: 309 KKQKQNLNITKGLPLPNNG----ACEHYKKSFRWFRFSCCDRVYPCDECHDADQNHTFEH 364
Query: 497 KTVTELICTEC--DTRQKVQPECQNCG 571
+IC C ++ K C +CG
Sbjct: 365 --ANRIICGYCAMESFYKKDATCPHCG 389
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 33.9 bits (74), Expect = 0.021
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Frame = +2
Query: 392 CAHYKRRAKFVT-PC--CNKVYICRYCHDENEQHYFN--RKTVTELICTEC 529
C HY +A V C C K Y C CHDE H F RK + C C
Sbjct: 23 CFHYHSKADVVALRCGQCEKFYACFQCHDELNTHPFLPWRKAKFHIPCVIC 73
>SPBC3B9.05 |||helper of TIM |Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 32.3 bits (70), Expect = 0.065
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 392 CAHY-KRRAKFVTPCCNKVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQ 550
C H + T CC + C CH+E H + + LIC +C ++Q
Sbjct: 2 CKHVLNAQVSIRTACCRRWIDCIECHNEIADHPLLKTSELTLICKKCRKAFRIQ 55
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/68 (29%), Positives = 37/68 (54%)
Frame = +3
Query: 393 VLITNGERSL*LHAVTKCTSAVTVMMKTNNTISIGRLLQS*YAPSATQDKRCSQNARTVE 572
VL+ E ++ L ++ T+ +T+ +NTIS RLLQ+ DKR ++ ++
Sbjct: 133 VLLREIEETIPLINLSLTTAGITLNTALSNTISPSRLLQA-QCFLELSDKRFEESHTEIQ 191
Query: 573 LGLESTLV 596
+G + T+V
Sbjct: 192 IGPKFTVV 199
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +3
Query: 66 FALNSFEIRLFHRKTLKNLFSSWNVHINNLNVTTIMTTSIPMTKPK*YLGSHSMKLLQ 239
F ++ ++ R F+R+TL+N F +W++ + + + K LG + K LQ
Sbjct: 708 FNISDWKRREFNRQTLRNAFDAWHLLMFRVTSLVMQADRFHEQKKNKLLGKYFRKWLQ 765
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 29.5 bits (63), Expect = 0.46
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 440 KVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQPECQNCG 571
K ICR+CH + +F + E + + K+ CQ CG
Sbjct: 666 KTPICRWCHSKRSSEWFVAPPIEE---SSPKDKSKIVALCQRCG 706
>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 256
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 425 TPCCNKVYICRYCHDENEQHYFNRKTVTELIC 520
TPC + IC Y H NE F T+ C
Sbjct: 115 TPCHTRDSICFYAHSSNEHAVFTGDTLFNAGC 146
>SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 268
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -3
Query: 467 HDSNGRCTLCYSMESQTSLAVCNEHSLCVFHRF 369
HD +C M+ + +C H CVF+ F
Sbjct: 39 HDQFDYSCICRWMDQSLTCPICKRHVDCVFYGF 71
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 508 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 422
CN IE + F+ TVT+++ F AW++
Sbjct: 105 CNPQSIENAMIPFVNTVTSEISF-DAWAY 132
>SPAC19G12.13c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 512 LICTECDTRQKVQPECQNCGVRFG--KYTC-LICN--LFDDEDKKQYHCDGCGICR 664
LI + + ++ E QNC G KYT L+ N ++E K Y C GICR
Sbjct: 95 LISNALERLENIELERQNCMREDGLVKYTNELLLNKETLNNEALKLYSCAKAGICR 150
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 114 KNLFSSWNVHINNLNVTTI 170
K +F WN+ +NNLN I
Sbjct: 82 KRIFKRWNMELNNLNCPDI 100
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 508 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 422
CN IE + F+ TVT+++ F AW++
Sbjct: 105 CNPQSIENAMIPFVNTVTSEISF-DAWAY 132
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 508 CNSLPIEIVLFVFIMTVTADVHFVTAWSH 422
CN IE + F+ TVT+++ F AW++
Sbjct: 106 CNPQSIENAMIPFVNTVTSEISF-DAWAY 133
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 259 TLYTIDSCNNFIE*DPKYHLGLVIGIDVVMIVVTFRLLICTFQEENKFFNVL 104
TLYT+ F Y +GL+ D V TFRL + +E F +VL
Sbjct: 178 TLYTVILKRKFGFETAVYAIGLLSACDKFETVNTFRLGLSKIVDEEFFSSVL 229
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 116 F*CFTVKQPYFKRIKSERATKKV 48
F CF PYF +KS +T+KV
Sbjct: 68 FVCFFFMFPYFVMLKSRMSTQKV 90
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 586 LSKPNST-VLAFWLHLLSCVALGAYQLCNSLPIEIVLFV 473
++K +T V+A WL+++ C+AL L + IE + V
Sbjct: 393 INKTTTTPVIAVWLNVVFCIALNLIGLGSIEAIEAIFSV 431
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 259 CVDLELLLKVIGLYSRLHNVEGKVRK-CKR 345
CV+ EL KV+G+ + ++ K+ C+R
Sbjct: 956 CVNKELFSKVVGILNNAEEIKNKIATLCER 985
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,079
Number of Sequences: 5004
Number of extensions: 57856
Number of successful extensions: 173
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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